Subtercola endophyticus: LQ955_02960
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Entry
LQ955_02960 CDS
T08409
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
suba
Subtercola endophyticus
Pathway
suba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LQ955_02960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suba03400
]
LQ955_02960 (mfd)
Enzymes [BR:
suba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LQ955_02960 (mfd)
DNA repair and recombination proteins [BR:
suba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LQ955_02960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
IstB_IS21
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UFS59770
LinkDB
All DBs
Position
579978..583844
Genome browser
AA seq
1288 aa
AA seq
DB search
MILQGLIAALSRASTFERALDESGRDADFSLTDGLRAPLLSGLLGRRAEKGLPQVLLVVT
ATGRDSETMRAGLAALAPEAEVLEFPAWETLPHERLSPSAEIVGKRIAALRRLAAWSAET
AAADAAGLPPQWSPPVAPKRAKKSSTSVESSASSATRPANSAATTRPATSVGASASAAAP
SRPRPLIVVASVRAALQPLADNLTEHEPVRLVRGGRGYDLARLTADLVDLAYSRVDMVTR
RGEFAVRGGILDVFPAVSEHPVRVDFFGDEIEELKLFSVADQRSIDDSTSGHGSGASSGS
ASSGPGLELVELPPSRELLLSESVRQRAREMQHEFPSLAGLLEKIGQGIPVEGMESLAPA
LLDRLVTVTHYLPEGAAIAVISPERVASRAVSLSETNREFLAAAWSAATVGAEAPIDLAS
GEFITLTDLKFAAGVNRPWWTLSTFDSGTASVDEHLQAIVDTDAHYVRIAADAVPSFQGN
VDGALEHVAARLHDGWSVAVVAAGNGLVERAADVLAGRELAARIVDDFPANPEPGIAYLV
KATVESGFELPEAKLALVSESEFYGRSAGYDARQVKKLATRRKNVVDPLQLKPGDIVVHQ
THGIGKFIELTQREVSSGGRNPVKTTREYLALEYAPSKRGYPGDKLYVPTDQLDLLTRYV
GGEAPALSKMGGSDWSSAKSKARKAVRDIAVELVKLYSARMASKGYAFGPDTPWQRELEE
AFPFAETPDQLTTIDEVKADMERPIPMDRLLAGDVGFGKTEVAVRAAFKAIQEGKQVAML
VPTTLLVRQHLETFSGRFAGFPVHTRAMSRFQTDKEVRETVKGLADGTVDMVIGTHRILT
ESLAFKDLGLVIIDEEQRFGVEHKDKLKKLKTNVDILSMSATPIPRTLEMAVTGIREMST
LATPPEDRHPILTYVGPNSDRQIAAAIHREMLREGQVFFVHNRVQSINRVAAHIAELVPD
ARIAVAHGQLPEHVLEQVIVDFWERKFDVLVSTTIIETGLDIPNANTLIIDRADKYGLSQ
LHQLRGRVGRGRERAYAYFLYDEGKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGA
GNLLGGEQSGHIAGVGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEDYVDSE
RLRLEAYQKLSSATSPASPEGQIDQVLEELIDRYGEPPEQVTNLITVSKLRRLAQRTGLS
EVVAMGSNLRVAPANLPDSVQVRLRRMYPSAKYLAAASALSVPMPVVNGSPLPDAELISW
VENLLAAIFPPPAAAAASPAADAAAASA
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
gtgatccttcagggcttaatcgctgcgctttcgcgcgcctcgacgttcgagcgcgccctc
gatgagtcgggtcgcgacgccgacttctcgcttaccgacgggctgcgtgccccgctgctc
tcgggcctgctcggccgccgcgccgagaagggtctgccgcaggttctgctcgtcgtcacc
gccaccgggcgcgactccgagaccatgcgcgccggcctcgcagcgctcgcgcccgaggcc
gaggtgctcgagtttcccgcgtgggagacccttccgcacgaacgactgagccccagcgcc
gagatcgtgggcaagcgcatcgcggctcttcgccgcctcgccgcctggtctgccgagacg
gcagcagcggatgcggccggtctcccgccgcagtggtcgccgcccgtcgccccgaagcgc
gccaagaagtccagcacgtcggtcgaatccagcgcctcgtcggcgacgcggcccgctaac
tctgccgccacgacgcggcccgcgacctccgtgggcgcttccgcatccgccgcagcaccc
tcccgcccccgcccgctcatcgtggtcgcctcggtgcgtgccgcacttcagccgctcgcc
gacaacctcaccgagcacgaaccggttcgcctcgtgcgcggcggccgcggttacgacctc
gcccgcctcaccgccgatctggtggacctggcctactcgcgcgtcgacatggtgacccgg
cggggggagttcgccgtgcgcggcggcattctcgacgtctttccggccgtgtccgagcat
ccggtgcgtgtcgacttcttcggcgacgagatcgaagagctcaagctcttctcggtcgca
gatcagcgctccatcgacgactcgacgagcggacacggcagcggcgccagcagcggcagc
gccagcagcggccccggcctcgagctggtcgagctgccgccgagccgcgaactgctgctc
agcgaatcggtgcgccagcgtgcccgcgagatgcagcacgagtttccgagtctcgccggc
ctgctcgagaagatcggccagggcatcccggtcgaaggcatggagagtctggctccggcc
ctgctcgatcgcctcgtcaccgtcacccactatctgcccgagggtgccgccatcgcggtg
atctcgcccgaacgagtcgcgagccgcgccgtgagcctctctgagacgaaccgcgagttt
ctcgccgccgcctggagcgccgcgaccgtcggcgccgaggcgcccatcgacctggcatcg
ggggagttcatcaccctcaccgacctcaagttcgccgccggggtgaaccgcccgtggtgg
accctcagtacgttcgacagcggtacagcatccgtcgacgaacatttgcaagccatcgtc
gacactgacgcacactacgtgcgcatcgcggccgatgccgtacccagctttcagggcaac
gtcgacggtgccctcgagcacgtcgccgcccgcctgcacgacggctggagcgtcgcggtg
gtcgccgccggaaacggactcgtcgagcgcgccgccgacgttctggccggccgcgagctg
gccgcccgaatcgtcgacgactttccggcgaaccctgagcccggcatcgcctacctcgtc
aaagcgaccgtcgagagcggattcgagctgcccgaggcgaaactcgccctcgtcagcgag
tctgagttctacggccgcagcgccggttacgacgcccgccaggtcaagaagctggcgacc
cgccgcaagaacgtcgtcgaccccttacagctgaagcccggcgacatcgtcgtgcatcag
acccacggcatcggcaagttcatcgaactcacccagcgcgaggtctccagcggcggccgc
aacccggtcaagacgacgcgcgaatacctggccctcgaatacgcgccgtcgaagcgcggc
tacccgggcgacaaactctacgtgcccaccgaccagctcgatcttctcacccgctacgtc
gggggagaagcgcccgccctgtcgaagatgggcggcagcgactggtcgagcgccaagtcg
aaggcccgtaaagccgtgcgcgacatcgcggtcgaactggtgaagctgtacagcgcgcgc
atggcgtcgaagggctacgcgttcggccccgacacgccctggcagcgagagctcgaagag
gcgttcccgttcgccgagacccccgatcagctcaccaccatcgacgaggtcaaggccgac
atggaacggcccatccccatggaccgcctgctcgccggcgacgtcggcttcggcaagacc
gaggtcgcggtgcgggccgccttcaaggccattcaagaaggcaaacaggtcgccatgctc
gtgccgaccactctgctcgtgcgccagcacctcgagacgttcagcgggcgcttcgccggg
ttcccggtgcacacccgcgccatgtctcggtttcagaccgacaaagaggtgcgcgaaacc
gtcaaaggtctggccgacggcaccgtcgacatggtcatcggcacccaccgcattctcacc
gaatcgcttgcgttcaaagacctcgggctcgtcatcatcgacgaagagcagcgcttcggg
gtcgagcacaaagacaagctcaagaaactcaagaccaacgtcgacattctgtcgatgagc
gccacgcccatcccgcgcacgctcgaaatggccgtcacgggcatccgcgagatgtcgacc
ctcgcgaccccgcccgaagaccggcacccgattctcacctacgtcggcccgaactccgac
cgccagatcgccgcggcaattcaccgcgaaatgctgcgcgagggccaggtgtttttcgtg
cacaaccgcgtgcaatccatcaaccgggtcgccgcgcacatcgccgagctggttccggat
gcccgcatcgctgttgctcacggccaactgcccgagcacgtgctcgaacaggtcatcgtc
gacttctgggagcgcaagttcgacgtactcgtgtcgaccacgatcatcgaaaccggactc
gacattccgaacgccaacacgctcatcatcgaccgtgccgacaagtacggcctgtcgcag
ctgcaccagttgcggggtcgcgtcggccgggggcgagagcgtgcgtacgcctacttcttg
tacgacgagggcaagccgctcagcgagaccgcgcacgaccggctttcgacgatcgctgcg
aacaacgagctcggctcgggcatgcaggtcgcgctgaaagacctcgagatccgcggcgcc
ggcaatctgctcggcggcgagcagtccggccacatcgcgggcgtcgggttcgatctctac
ctgcgcatgatcggcgaggctgtgtcgacgttccgcggcgatgtagccgaggggcagacc
gagctgcggctcgaactgcccgtcgacgcccacattcccgaggactatgtcgacagcgag
cgtttgcggctcgaggcctaccagaagctctcgtctgccacgtctcccgcctcgcccgag
ggccagatcgaccaggttctcgaagagctgatcgatcgttacggcgaaccgcccgagcag
gtcacgaacctcatcacggtgtcgaagctgcgccggctcgcccagcgcaccgggctctcc
gaggtggtggccatgggttctaacctgcgtgtcgcgcccgcgaacctgcccgactcggtg
caggtgcggctgcgccgcatgtacccgtcggcgaagtatctcgccgccgcgtcggcgctt
tcggtgcccatgccggtcgtgaacggttccccgctgccggatgccgaactcatctcctgg
gtcgagaacctgctcgccgccatcttcccgccgccggccgccgctgctgcctcgccagcc
gccgacgctgctgccgcctcggcctga
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