Subtercola endophyticus: LQ955_05515
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Entry
LQ955_05515 CDS
T08409
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
suba
Subtercola endophyticus
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LQ955_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suba03021
]
LQ955_05515
Transcription machinery [BR:
suba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LQ955_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UFS60215
LinkDB
All DBs
Position
1153315..1154634
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AA seq
439 aa
AA seq
DB search
MATTKAPTAKTPTKAPAAKASATKKTAAAGKGPATKTAAKGKATASKASAELDGDDEEAV
DLEDVVDDDTEGEDVLVVVAVPDDADSTEAVATDDDTDSDDDSKKSAVAEDLPTGALVLS
LVDDDDDVPVYSSAITGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAEDKLAN
TEGMTPQLKRELQWVAKDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLI
RAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQD
LGREPTPEELSRELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPAD
AVGFTMLQKQLESLLDSLSEREAGVIRMRFGLGDGMPKTLDQIGDTFGVTRERIRQIESK
TMAKLRHPSRSQSLRDYLE
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggccaccacaaaggctccaacagccaagacccccaccaaggcgcccgccgcgaaggcg
agcgcaaccaagaagaccgcagcggccggcaagggccctgccaccaagacggccgccaag
ggcaaagccaccgcgagcaaggccagcgccgagctcgacggtgacgatgaagaggccgtc
gacctcgaagacgtcgtcgacgacgacactgagggcgaagacgtgctcgtcgtcgtcgcc
gtgcccgacgatgccgacagtactgaggcagtcgcaaccgacgacgacaccgactccgac
gacgactcgaagaagagtgctgtcgccgaagacctgccgaccggtgcgctcgtgttgtcg
ctcgtcgacgacgatgacgacgttcccgtctattcgagcgccatcaccggtgcgaccgcc
gaccctgtcaaggactacctgaagcagatcggtaaggtcgccctgctgaacgcggccgaa
gaggtcgagctcgccatgcgcatcgaggcgggcctgttcgccgaagacaagctggcgaac
accgaaggcatgacgccccagctgaagcgtgagctgcagtgggtggccaaagacggtcag
cgtgcgaagagccacctgctcggtgcgaacctgcgcctcgtggtgtcgctcgccaagcgc
tacaccggccgcggcatgcagtttctcgacctcatccaagagggcaacctgggcctcatc
cgtgccgtcgagaagttcgactacaccaagggcttcaagttctcgacctatgccacctgg
tggattcgccaggcgatcacgcgtgccatggccgaccaggcccgcaccatccgtattccg
gtgcacatggtcgaggtcatcaacaagctcgcccgggttcagcggcagatgctgcaagac
ctcggtcgtgagcccacgccagaagaactctcccgcgagctcgacatgacgcctgaaaag
gtcgtcgaggtgcagaagtacggtcgcgagccgatttcgctgcacaccccgctgggtgaa
gacggcgacagcgagttcggtgacctcatcgaagacaccgaagcggtcgttccggccgac
gcggtgggcttcaccatgctgcagaagcagttggagtcgctgctggattcgctctccgaa
cgtgaggcgggcgtcatccgcatgcgcttcgggctcggcgacggcatgccgaagacgctg
gaccagatcggtgacacgttcggcgtgacgcgtgagcgcattcgccagatcgagtcgaag
accatggcgaagcttcgtcacccgtcgcgctcgcagtcgctgcgcgactacctcgagtaa
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