Subtercola endophyticus: LQ955_05625
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Entry
LQ955_05625 CDS
T08409
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
suba
Subtercola endophyticus
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
suba03016
]
LQ955_05625
Enzymes [BR:
suba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LQ955_05625
Transfer RNA biogenesis [BR:
suba03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LQ955_05625
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF6882
Motif
Other DBs
NCBI-ProteinID:
UFS60235
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All DBs
Position
complement(1182247..1183470)
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AA seq
407 aa
AA seq
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MTDALPANEGSPRSVIDTRQAYLDAVQVIAGGTGPIAIDAERASGFKYSQRAYLIQLYRR
GAGTFLFDPPPIGSFAELSAVIGDEEWVLHAASQDLACLREVELEPTRIFDTELAARLLG
LPRVGLGTVVEELLGIHLAKEHSAADWSTRPLPAAWLEYAALDVELLIDLRDVMVRLLDE
QQKTEIARQEFQATLDKEAKAPLADPWRRLSGVHSLRGAKNLSVARELWLARDQLARETD
IAPGRLVPDLSLTAVARALPESKRELAAMREFTGRASRSELDRWWAAIEVGRASTTPPQL
TRSTDTLPPPRAWADRNPEADARLKAARQALLALGEEHAIPLENLLTPELLRRLAWTPPT
VVDAQTVAEALQKSGARPWQIELTAQPIAQAFVEAHQSLLDAAEGES
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacgcactgccggcgaacgagggctcgccgcgcagcgtcatcgacacccggcag
gcgtacctcgacgccgtgcaggtcatcgccgggggcaccgggcccattgctatcgatgcc
gaacgagcgtcgggcttcaaatactcgcagcgcgcctacctcattcagctctaccggcgc
ggtgccggcaccttcttgttcgaccctcccccgatcggatcgttcgccgaactctctgcg
gtgatcggtgacgaagagtgggtgctgcatgccgcgagccaagacctcgcctgcctgcgt
gaggtcgagctggaaccgacgcgcatcttcgataccgaactggccgcgcggctgctcggg
ctgccccgcgtggggctcggcacggtggtcgaagagctgctgggcatccacttggcgaaa
gagcactcggcggccgactggtcgacgcgcccgctccccgcggcatggctggagtacgcg
gcactcgacgtcgaactgctcatcgatctgcgcgacgtgatggtgcggctgctcgacgag
cagcagaagaccgaaatcgcgcggcaggagtttcaggccacgctcgacaaagaggccaaa
gcgccgctcgccgatccgtggcgccgactgtcgggcgtgcattcgctgcgaggcgccaag
aacctctcggtcgcccgcgagctgtggttggcccgcgaccagctggcgcgcgagaccgac
atcgccccgggccggctcgttcccgacctgtcgctgaccgcggtggcgcgggcgctgccg
gagtcgaaacgtgagctcgccgccatgcgcgagttcaccgggcgcgcgtcacgctcggaa
ctcgaccgctggtgggccgccatcgaggtgggccgggcatccacgaccccgccacaactg
actcgctcgaccgatacgctgcccccgccgcgggcctgggccgaccggaaccccgaagcg
gatgcccggctgaaggccgcgcgccaggcccttctggcgctcggtgaagagcacgccata
ccgctcgagaacctgctcacgcccgagctgttgcgcaggctggcctggacgccgccgacc
gtggtcgacgcccagacggtcgccgaagccctgcagaagtcgggcgcccggccgtggcag
attgagctaaccgcacagccaatcgcccaagcctttgtagaagcccaccaaagccttctc
gacgccgccgagggtgaatcgtag
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