Subtercola endophyticus: LQ955_06105
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Entry
LQ955_06105 CDS
T08409
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
suba
Subtercola endophyticus
Pathway
suba03030
DNA replication
suba03410
Base excision repair
suba03420
Nucleotide excision repair
suba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQ955_06105 (polA)
03410 Base excision repair
LQ955_06105 (polA)
03420 Nucleotide excision repair
LQ955_06105 (polA)
03440 Homologous recombination
LQ955_06105 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
suba03032
]
LQ955_06105 (polA)
03400 DNA repair and recombination proteins [BR:
suba03400
]
LQ955_06105 (polA)
Enzymes [BR:
suba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LQ955_06105 (polA)
DNA replication proteins [BR:
suba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LQ955_06105 (polA)
DNA repair and recombination proteins [BR:
suba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LQ955_06105 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LQ955_06105 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_2
HHH_5
DNA_pol_P_Exo
Motif
Other DBs
NCBI-ProteinID:
UFS60318
LinkDB
All DBs
Position
1284925..1287651
Genome browser
AA seq
908 aa
AA seq
DB search
MSDIEQPTLLIIDGHSLAFRAFYALPVDSFQTRDGQHTNAIHGFLSMLLLLLKNEKPTHL
AVAFDMSRQSFRTREYPEYKGTRHETPPEFSGQVPLLKDALKAMNIETLEKEDFEADDIL
ATLARQGTEQGYRVLVVSGDRDAIQLVNDNVTLLYPSRQGVTELTRYDRNKVFERYGIEP
HQYPEVAALVGETSDNLPGIPKVGEKTAVKWLNQFGSLDEILRRSDEIGGKVGESLREFQ
ENAVRNRKLNRLLTDVELPLGPADFGKRPIDEQAVRDLFARLEFRTLLERVFKLEGVGDD
GTGSSAFGGGLGSGAGAGGAGAGGRLVDEKAAVAPAPTTLLDEELQAWLARAVAAEPFGL
GLEVELLDGKPIGFGLASAESTVFLPWIPDRADYLPFENWLASPAPKLLHGAKHQLKTLL
TAGLTVDGITFDTSVAAWLLKSDSASPALTDLVDRYLNESLPTPDPNQLVPDDDSVVGPA
GTAWYVARVARAINEKLDDGSRSVLVDIEMPVLAVLAQMELDGVAVSHTQLSELSNELTT
RSAQIASDAFGIIEREINLGSPKQIQEVLFDQLGMPKTRATKTGYSTDAVALADLQASSP
HPFLDLLLLHRDATKLNQIVETLDKSISTDRRIHTTYIQTGSSTGRISSTDPNLQNIPVR
TEEGRRIRKAFMVGESYETLLTTDYSQIEMRIMAHLSEDEGLITAFQSGEDLHRFVGARI
FGVEPEDVTSAMRSKVKAMSYGLAYGLSAFGLSKQLRIPTAEAKQLMTDYFERFGAVRDY
LRNVVVQAREDGYTETIFGRRRLFPDLSSPNRVLRDNAERQALNAPIQGTAADILKIAMV
NISLDLASHSLQSRMLLQVHDELVFEVFPGEWDSLAAIVETRMSTAAELKVPLDVQLGRG
QNWNEAAH
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgacatcgaacagcctacccttctcataatcgacgggcattcgctcgctttccga
gcgttctacgcgcttcccgtcgacagttttcagaccagagacgggcagcacacgaacgcc
atccacggctttttgtcgatgcttttgctgcttctgaagaacgagaagccgacacatctg
gctgtggcgttcgacatgtcgaggcagtcgttccgcacgcgtgaataccccgaatacaaa
ggcacacgacacgagaccccgccagagttctcgggccaggttccgctgctgaaagacgcc
ctcaaggcgatgaacatcgaaacgctcgagaaagaagacttcgaggccgacgacattctc
gccacgctcgcccggcagggcaccgagcaggggtatcgcgtgcttgtcgtgtcgggcgat
cgcgacgcgatccagcttgtcaacgacaacgtcacgctgctctacccgtcacggcagggt
gtcaccgaactcacgcggtacgaccgcaacaaggtgttcgagcgctacggcatcgagccg
caccagtaccccgaggttgccgcgttggtcggcgagacgagcgacaatctgccgggcatc
ccgaaggtcggcgaaaagaccgcggtcaagtggctgaaccagttcggcagcctcgacgag
attctgcgccgctccgacgagatcggcggcaaagtcggcgagagcctgcgcgagttccaa
gagaacgcggtgcgcaaccgcaaactgaaccggctgctcaccgacgtcgagctgccgctc
gggccggccgacttcggcaagcggccgatcgacgagcaggccgtgcgcgacctgttcgct
cggctggagtttcgcacactgctcgagcgggtgttcaagctcgagggtgtcggcgacgac
ggcaccggcagcagcgcgttcggcggcggcctcggcagtggtgccggtgctggcggcgcc
ggcgcgggcggccgtcttgtcgacgaaaaggccgccgtggctccggccccgacgacgctg
ctcgacgaagaactgcaggcgtggctggcccgggccgttgcggccgagccgttcggcctg
gggctcgaggtcgagttgctcgacggcaaacccatcgggttcggcctcgccagcgccgaa
tcgaccgtctttctgccgtggatccctgaccgcgccgactacctgccgttcgagaactgg
ctggcgagccccgcaccgaagcttctgcacggcgcgaagcaccagctgaagactctgttg
acagcaggcctcacggtcgatggaatcaccttcgacacgtcggtcgcggcatggctgctc
aagtcagacagcgcgtcgccggcactcaccgatctggtcgatcgctacctcaacgaatcg
ttgccgacacccgatcccaaccagctcgtgcccgacgacgactcggtggtcggcccggcg
ggcaccgcctggtacgtggcgcgcgtcgcgcgagcgatcaatgagaagctcgacgacggg
tcgcgctcggttctcgtcgacatcgagatgcccgttctggccgtactggcccagatggag
ctcgacggcgtcgccgtgagtcacacccagctctccgagctgtcgaacgagctcaccaca
cgctcggcccagatagcgagcgacgcgttcggcatcatcgagcgcgagatcaacctgggc
tcgccgaagcagatccaagaggttctgttcgaccagctcggcatgccgaagacccgcgcc
acgaagaccggctactccaccgacgcggtcgcgctggccgacctgcaggcgagttcgccg
catccgtttctcgatctgttgctgctccaccgcgacgccaccaagctcaaccagatcgtc
gaaaccctcgacaagtcgatcagcaccgaccggcgcatccacaccacgtacatccagacc
ggcagttcgaccggccgcatctcgtcgaccgacccgaatctgcagaacattccggttcgc
accgaggagggccggcgcatccgcaaggctttcatggtgggggagtcgtacgagacgctg
ctgaccactgactactcgcagatcgagatgcgcatcatggcgcacctctccgaagacgag
gggctgatcaccgcttttcagtcgggcgaagacctgcaccggttcgtgggcgcccgcatc
ttcggtgtcgagcctgaagacgtgacctcggccatgcggtcgaaggtcaaggccatgtcg
tacggcctcgcctacggtctctcggcgttcgggctctcgaaacagctgcgcatccccacc
gccgaggcgaagcagctgatgaccgactacttcgagcgtttcggtgcggtgcgcgattac
ctgcgcaacgtcgtcgtgcaggcgcgcgaagacggctacaccgaaaccatcttcggtcgc
cgccgcctctttcccgacctgtcgagcccgaaccgcgttctgcgtgacaacgccgagcgc
caggcgttgaacgcgcccatccagggcaccgccgccgacattctgaagatcgccatggtc
aacatctctcttgacctcgcgtcgcattctctgcagtcgcgcatgcttctccaggtgcac
gatgagctcgtcttcgaggtgtttccgggcgagtgggattccctggccgccatcgtcgaa
acccgcatgtcgaccgccgccgagctcaaggtgccgctcgacgtgcaactcggccgcggc
cagaactggaacgaggcggcgcactag
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