Subtercola endophyticus: LQ955_06390
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Entry
LQ955_06390 CDS
T08409
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
suba
Subtercola endophyticus
Pathway
suba03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LQ955_06390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
suba03000
]
LQ955_06390
03400 DNA repair and recombination proteins [BR:
suba03400
]
LQ955_06390
Enzymes [BR:
suba01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LQ955_06390
Transcription factors [BR:
suba03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LQ955_06390
DNA repair and recombination proteins [BR:
suba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LQ955_06390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
UFS60372
LinkDB
All DBs
Position
complement(1350583..1352277)
Genome browser
AA seq
564 aa
AA seq
DB search
MTTETDPVFEQRYRAMKAKDARFDGQFITGVHSTGIYCRPSCPARTPQPQNVSFYLTAAA
AHEAGLRACKRCFPDAVPGSPEWNLRDDLAGRAMRLIDDGVVDREGVDGLARRLGYTPRH
LTRVLAAELGAGPQALARAHRAQSARTLLQSTDLPITQVVYASGFSSVRAFNDTISAVYE
MSPSALREKGRRARGRMSGGGVARAAGLRRAAVEANEWRETGETGETRETRETRESRESG
IAGTTSAHAPGALVTVTLPARAPFDGRGVIDFLAARAVAGVEEVRAGIYRRTLRLPHGWA
VIELEARETSVLCRARLENLADLSTVSARVRRLFDLDADAQAIDEALASVPGLGESVRRV
PGIRVPGAVDAYEIVFRALIGQQVSVAAARTALGRLADALGDRIDEGASSDIDAATGPLS
PGADRKARAQNLTPRILFPTAAQIATVGREVLRGPAKRIDTIIRVAEALASGELVVDVGV
SQAKLMADLQAFAGVGPWTAGYVAMRVLGATDILLDGDLALRAGATRLGLPGDRRELVRF
AEQASPWRSYLGMHLWRANRSLEG
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgagaccgaccccgtgttcgaacagcggtaccgcgcgatgaaggccaaagac
gctcggtttgacgggcagttcatcacgggcgtgcactccaccggaatctactgccggccg
agctgccccgctcgtaccccgcagccccagaacgtctcgttctacctcacggctgccgcg
gcccacgaggccggcctgcgcgcgtgcaagcggtgttttcccgatgccgtgccgggttcg
ccggaatggaatctgcgcgacgacctggccggccgtgccatgcggctcatcgacgacggt
gtggtcgaccgggagggcgtcgacgggctcgcgaggcggctggggtacacaccgcggcac
ctcacccgcgtgctcgccgctgaactcggcgccggcccgcaggctctcgcccgtgcgcac
cgcgcccagagcgcccgcactctgctgcagagcactgacttgccgatcactcaggtcgtc
tacgccagcggattctcgagcgtacgggccttcaacgacaccatctcggctgtgtacgag
atgtcgccgtcggcgctgcgggagaaggggcggcgtgcgcgcggccggatgtcgggtggc
ggggtggctcgtgccgccggtctccggcgagcggcagtcgaggcgaacgagtggcgcgag
acgggcgagacgggcgagacgcgcgagacgcgcgagacgcgcgagtcgcgcgagtcgggc
atcgcaggcacaacgtcggcgcatgcgcctggcgctctcgtgacggtgacactgccggcc
cgcgcgcccttcgacgggcgcggcgtgatcgactttctcgccgcgcgagccgtcgccggt
gttgaggaggtgcgcgcggggatctaccgccgcactctgcgcctccctcacggctgggcg
gtgatcgaactagaggcccgcgagacgagcgtgctgtgccgcgcgcggctcgagaacctc
gccgacctctccaccgtgtcggcgcgcgtgcgccggttgttcgacctcgacgccgacgct
caagccatcgacgaggcgctggcctcggtgccggggctgggcgaatcggtgcggcgggtg
ccgggcatccgggtgcccggggcagtggatgcctacgagatcgtttttcgcgccctcatc
ggtcagcaggtctctgttgcggcggcgcgcacggccctcggcaggctcgcggacgcgctc
ggcgatcgcatcgacgagggtgcgagctcggatatcgatgcggccaccggccccctcagc
cccggcgccgaccggaaggcacgtgcgcagaacctcacaccgcgcatcctgttccccacg
gcggcgcagatcgccaccgtggggcgggaggtgctgcgggggccggcgaagcgcatcgac
acgatcatccgcgtcgccgaggcactcgcctcgggagagctcgtggtcgacgtcggtgtt
tcgcaggcgaagctgatggccgatcttcaggccttcgcgggggtcgggccgtggacggcc
ggctacgtggccatgcgggtgctcggggcgaccgacattctgctcgacggcgacctcgcc
ctgcgggccggggccacccggctcggcctgcccggcgaccgacgcgaactggtgcggttc
gccgagcaggcctcgccgtggcgcagctacctcggcatgcacctctggcgtgcgaaccgt
agtctggagggatga
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integrated database retrieval system
