Subtercola endophyticus: LQ955_12005
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Entry
LQ955_12005 CDS
T08409
Name
(GenBank) DEAD/DEAH box helicase
Organism
suba
Subtercola endophyticus
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SWIM
ResIII
Motif
Other DBs
NCBI-ProteinID:
UFS57771
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All DBs
Position
2581548..2585291
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AA seq
1247 aa
AA seq
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MSTPAFPLVDVGEISRLVGRAAFERGRVYARGREVLELNWNEQTLVLTGRVQGSAFEPYE
SEVILRRLGTRFIVEGAALCSCPMRSDCKHVAAVLLASNTRHLVEATPSIGVEPARQVHG
SQRFDSRFQPADPARTPVRSTQPGDEFAESSLDRWNTDDSFDDTTREESGWFPPEPRLRP
EAAAEALDWRSTLAALGPSNSANASGVGRASGARRTTGRTPGETTALGLQFEIREFVPRT
REHWRGPLSQTAKPAASAEGGGDTGAVASGHPRRLAVRPVMKNHVGSFVKASLSWATLSH
QTNRLNLDPAQAKWFAQFAALQRATRELYTGQEADWLYLDDFTSPLLWNLFDEANELGIA
LLGSKKSLRVRRGRHARVRLETHGGHDSALRLVPVTSLDGVDYERGATGLIGSHGVYVYE
LGTNPFITFTRLETPLDERVEPLFDRSSGIDVPADEVPEFFDRYFPRLQRAIDIVSADSA
IPLPRISAPVLVLTARFRPKNVLQLDWEWEYGGDKRTRLPLSTDSVTNIGVSDIGVTDID
LSDIDRHDEVESQTLALVIPLIQRLIDDHSDAGIDGAINESVTEPARLVEHLVLQGFEAA
VFTDKVLSELQHVAGVRVDIVGKRPAYRELSGVPELTVTTVESEKRDWFDLGIVVNMNGY
RIPFAPLFKALARKQKKLLMVDKTYLALDHPVFERLRELLEEASGLDEWETGVRITRYQA
DLWSEFEDLAEESEQAVTWRDAVSVLSGSTAPDTLPVPAQLQATLRPYQHDGFEWLAFLF
HHRLGGVLADDMGLGKTLQTLALIAHTRAAPTQPDLAHHGSAQPPADRVEGARPAAPFLV
VAPTSVVSNWVNEAARFTPDLVVRSVTATQAKSASTLAELAEGADVLVTSYALFRLDAPA
YRALSWSALVLDEAQFVKNHTSKLHRCAKDLDAPVKFAITGTPIENNLMELWALFDIVAP
GLFPSSRKFTEDYVRPLGHGFDSEILTKLRRRIRPFLLRRTKELVAPELPAKQEQVLSIG
LAPSHRSLYDTYFQRERQKLLGLIDDLDRNRLIVFRSLTLLRLLSLDASLIDEKYAAVPS
AKLDALLEHLDDVAAEGHRALVFSQFTSFLKRAAERLDAQGIEYEYLDGSTRRRSEVIDR
FKTGRAPVFLISLKAGGFGLNLTEADYVFLLDPWWNPASETQAIDRTHRIGQKQSVNVYR
LVSADTIEEKVMALKEQKAQLFDAVLDDDATFSSALTADDIRGLFDT
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaccagcctttccgctcgtcgacgtcggcgagatctcgcggctggtcgggcgc
gccgcgttcgaacggggtcgcgtctacgcccgcgggcgcgaggtgctcgagctgaactgg
aacgagcagacgctcgtgctcaccggccgcgttcaaggcagcgcgttcgagccgtacgag
agcgaagtcattctgcgacgcctcggaacgcgcttcatcgtcgaaggcgcggcactctgc
agttgcccgatgcgttctgattgcaagcacgtcgccgccgtgctcttggccagcaatacc
cgtcacctcgtcgaagcgacaccctcgatcggcgtcgaaccggcccggcaggttcacggc
agccaacggttcgactcgcgctttcagccggccgacccggcccgtactcctgtgcgcagc
acgcaaccgggagacgaattcgccgagtcttccctcgaccggtggaacaccgacgactcg
ttcgacgacacgacgcgcgaggagtcgggctggtttccgccagagccacgactgcggccc
gaagccgccgccgaagcgctcgactggcggtcgacgctcgccgcgctcgggccgtcgaac
agcgccaatgcgagcggggtcggccgggcatccggagctcgccgaacgacgggccgcact
ccaggagaaacgacggcactcggtctgcagttcgagattcgggagttcgtgccccgaacg
cgtgagcattggcgtgggcccctgtcgcagacggccaaaccggccgcgagcgcagagggc
ggcggcgacaccggcgcggtggcgagcggtcatcctcgccgactggctgtgcgccccgtc
atgaagaaccacgtcggcagcttcgtcaaggcgagcctcagctgggccacgctgagccac
cagaccaatcgcctgaacctcgaccccgctcaagcgaagtggttcgcgcagttcgcggcc
ctgcaacgagccacccgtgagttgtacaccggccaggaggccgactggctctatctcgac
gacttcacgagcccgctgttgtggaacctgttcgacgaagcaaacgagttgggtatcgct
ctgctggggtcgaagaagagcctgcgagtgcggcgggggcggcacgcacgggtacgcctc
gaaacgcacggtggccacgacagtgcgctgcggctcgtgcccgtgacgtcgctcgacgga
gtcgactacgagcgcggagcaaccgggttgatcggctcgcacggggtgtatgtctacgaa
ctgggcacaaacccgttcatcacgttcacgcgactcgaaactcccctcgacgagcgggtc
gagccgcttttcgatcgctccagcggcatcgatgttccggcagacgaggtaccggagttc
ttcgaccgctactttccgcggctgcagcgagccatcgacatcgtgtcggccgacagcgcc
ataccgctgccgcgcatctctgcgccggttcttgtgctcacggcgcgttttcgcccgaag
aacgtgcttcagctcgactgggagtgggagtacggcggagacaagcgcacccgccttcct
ctgtcgaccgattctgtgacaaacatcggtgtgagcgacattggtgtgaccgacatcgat
ctgagcgacatcgaccggcacgacgaagtcgagagccagactctcgcgctggtcattccc
ctcatacagcggctgatcgacgaccacagcgatgcgggaatcgacggcgcgatcaacgag
tcggtcaccgaaccggcccgattggtcgagcatctggtgctgcaaggcttcgaagccgcc
gttttcaccgacaaggtgctgagcgagctgcagcatgtcgccggcgtgcgggtcgacatc
gtcggtaagcggccggcgtatcgcgagctcagcggcgtgcccgaactcactgtgaccacg
gtcgaaagcgagaagcgcgactggttcgacctcggcatcgtcgtgaacatgaacggctac
cgcatacctttcgctccgctgttcaaggccctcgctcgcaagcagaagaaactgctgatg
gtcgacaagacctacctcgcgctcgaccatccggttttcgagcgtctgcgtgagctgctc
gaagaggcctcgggcctcgacgagtgggagaccggtgttcgcatcaccaggtaccaggcc
gatctgtggagcgagttcgaagacctggcagaagagtccgagcaggccgtgacgtggcga
gacgccgtctctgtcttgagcggatcgacagcccccgacaccctgccggtgccagcgcaa
ctgcaggcgacgctgcggccgtatcagcatgacggattcgaatggctcgcctttctcttt
catcatcggctcggcggagtgctcgccgacgacatggggctcggtaagacgctgcagacc
ctcgcgctgatcgcccatacccgagccgccccgacgcagcccgatctggcccatcacggc
tcggcgcagccaccggcagaccgcgtcgagggcgcgagaccggcggccccgtttctcgtg
gtggcgccgacctcggtggtttcgaactgggtcaatgaggccgcccggttcacccccgat
cttgttgtgcggtcggtgaccgccacccaggcgaagagcgcatctactctcgccgagctg
gcagagggcgccgatgtgctcgtgacgagttacgcactgttccggctcgacgcgccggcc
taccgcgctctgagctggtctgcgctggtgctcgacgaggctcagttcgtgaagaaccat
acgtcgaagttgcaccgctgcgcgaaagacctcgatgcgccggtgaagttcgcgatcacg
ggcacccccatcgagaacaatctgatggagctgtgggcgctgttcgacatcgttgcaccg
ggcctgtttccgtcgtctcgaaagttcaccgaagactatgtcaggcctctcggtcacggc
ttcgactctgagattctcaccaagctgcgccgccgaatccgcccctttctgctgcgcaga
accaaagaactcgtggcaccagagcttccggcgaagcaagaacaggtgctcagcatcggc
ctcgcgccatcgcaccgcagcctctacgacacctattttcagcgtgagcggcagaagctg
ctcggcctgatcgacgacctcgataggaatcggctcatcgtgttccgttcgctgacgctc
ctgcgcctgttgagcctcgacgcctcgctgatcgacgagaagtacgctgcggtgccctcg
gcaaaactggatgccctgctcgagcacctcgacgacgtcgccgccgaagggcaccgtgcc
cttgtattcagccaattcacttcctttctgaaacgtgctgccgagcggctcgatgcccag
ggcatcgagtacgaatacctcgatggctccaccaggcgacgctccgaggtcatcgaccgg
ttcaagaccggccgcgcgcccgtgttcttgatcagcctgaaagccggtgggttcgggctg
aacctcaccgaggccgactatgtgtttctgctcgacccttggtggaacccggcgtcggag
actcaggccatcgaccgcacgcatcgcatcggccagaagcagagcgtcaacgtctaccgc
ctcgtctcggccgacaccatcgaagagaaggtgatggctttgaaggagcagaaggctcag
ctgttcgacgcggttctcgacgacgatgcgacgttcagctcggcgctcacggccgatgac
atccgcgggctgttcgacacctga
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