Subtercola endophyticus: LQ955_19380
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Entry
LQ955_19380 CDS
T08409
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
suba
Subtercola endophyticus
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
suba03016
]
LQ955_19380
Enzymes [BR:
suba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LQ955_19380
Transfer RNA biogenesis [BR:
suba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LQ955_19380
Prokaryotic type
tRNA splicing ligases
LQ955_19380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UFS59109
LinkDB
All DBs
Position
complement(4183321..4184511)
Genome browser
AA seq
396 aa
AA seq
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MKKITERLLSWASLLEDNTLEQARTSSSMPFIYPHLALMPDAHLGLGATVGSVIPTLGAV
MPAAVGVDIDIGCGMIAVRTQFTASDVDARVTAGAPLRELREQIERAIPLSAGGKNNKIV
ATAVPRVEELRTLATESGFDPASYVREWERQLGTLGSGNHFIEVSLDENGAVWVFLHSGS
RGIGNRIAQHHIAVAQALMTKWWIELPDRDLAYLVEGTNEFDRYIAELRWAQRFALLNRE
EMMDRVIRQLSEWMTVPIVERERINCHHNFTEKERHYGKSVWLSRKGAISARKGQPGLIP
GSMGTASYVVAGLGNPVALESSPHGAGRSYSRSAARRTFTHEQLREAMVGIEFRDTDAFI
DEIPAAYKPIDQVMADAAELVEVRHTLRQILNVKGN
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatcactgaacgcttgctcagctgggccagtctgctcgaagacaacacactc
gaacaggcccgcacctcgtcgagcatgccgttcatctaccctcacctggcactgatgccc
gacgcccacttgggcctcggcgcaacggtcggctcggtcatcccgacgctcggcgcagtc
atgccggctgccgtcggcgtcgacatcgacatcggctgcggcatgatcgcagtcagaacg
cagttcacggcatccgatgtcgacgctcgcgtcacagctggagcgccactgcgggagttg
cgcgaacagatcgagcgggccattccgctgtcggcgggcggcaagaacaacaagatcgtg
gcgacagccgtgccgcgcgtcgaagagctgcgcacgctcgccacggaatcggggttcgac
cctgcgagctacgttcgcgagtgggagcggcagctgggcactctcggcagcggaaaccac
ttcatcgaagtctcgctcgacgagaacggcgcggtgtgggtgttcttgcactcgggcagc
cgaggcatcggcaaccgcatcgcacaacaccacattgcggtcgcgcaagcgctcatgacg
aagtggtggatcgagctgcccgaccgcgacctcgcctacctggtcgagggcacgaacgag
ttcgaccgctacatcgccgagctgcgctgggcgcagcggttcgctctgctcaaccgcgaa
gagatgatggatcgcgtcattcgtcagctcagtgagtggatgaccgtaccgatcgtcgag
cgggagcgcatcaactgccaccacaacttcaccgagaaagagaggcactacggcaagagc
gtctggctctcgcgaaagggcgcgatctcggctcgcaagggtcagcccgggctcatccca
ggctcgatgggaacggcctcgtacgtggtggccgggctcggcaacccggtcgcactggag
tcgtcgccgcacggtgcgggccggtcgtactcccgctcggcggcgcggcgcaccttcacg
cacgaacagttgcgtgaagcgatggtgggcatcgagtttcgcgacaccgatgccttcatc
gacgagattcctgcggcgtacaagccgatcgaccaggtgatggccgatgcggccgagctg
gtggaggtgcggcacacgctgcgccagattctcaacgtgaagggcaactga
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