Subtercola sp. PAMC28395: KPL76_07285
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Entry
KPL76_07285 CDS
T07261
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
subt
Subtercola sp. PAMC28395
Brite
KEGG Orthology (KO) [BR:
subt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
subt03016
]
KPL76_07285
Enzymes [BR:
subt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KPL76_07285
Transfer RNA biogenesis [BR:
subt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KPL76_07285
Prokaryotic type
tRNA splicing ligases
KPL76_07285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QWT25137
LinkDB
All DBs
Position
complement(1577131..1578297)
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AA seq
388 aa
AA seq
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MEHISKRLISWASILDDQTRAQATMASTMPFIFPHIALMPDAHLGKGATVGSVIPTLGAI
MPAAVGVDIGCGMIAVRTQFTDVDLPADRKHLREAIERAVPLSAGKYNAKLVATALPRIA
ELETLATASGFDPAERSPNWRLQLGTLGSGNHFIEVSLDEEDRVWLFLHSGSRGVGNRIA
MHHIGVAQEYCERHWIDLPDQDLAYLVEGTTEFDRYVAELRWAQMFALLNREEMLERIIR
QFEDWVGEPIVESERVNCHHNYTEPERHFGRDVWLSRKGAIDATLGTPGLVPGSMGTRSY
VVAGKGNTLALHSSPHGAGREYSRSAARRTFTRAELDIAMEGIEWRPTDAFLDEIPSAYK
DIDVVMDDASSLVEVRHTLRQIINVKGD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
gtggaacacatttccaaacgactcatcagctgggcttcgatcctcgatgaccagacgcgc
gcccaggcgaccatggcgtcaacgatgccgttcatcttcccgcacatcgcactgatgccc
gacgcgcacctcggcaaaggcgcaaccgttggttcggtcatcccgacactcggtgcgatc
atgcctgccgcagtcggtgtcgatatcggctgcgggatgatcgccgtgcgtacacagttc
accgatgttgatctgcctgccgaccgcaaacaccttcgcgaggcaatcgaacgcgctgtg
ccgctgtctgcgggcaaatacaacgccaagctcgttgccaccgcgctgccgcggatcgcc
gaactcgaaactctcgcgacagccagtggattcgaccccgccgaacgatcgccgaactgg
cgcctgcagctcggcacactggggtcaggcaaccacttcatcgaggtctcactcgacgaa
gaagaccgggtgtggctgttcctgcactctggctcgcgcggagtcgggaacaggattgcg
atgcaccacatcggtgtcgcacaggagtactgcgaacggcactggatcgatctgcccgat
caggatctcgcctacctggtggaaggcacgaccgaattcgatcgctacgttgccgagttg
cggtgggcacagatgttcgccctactgaaccgtgaagaaatgctggagcggatcatccgg
cagttcgaagactgggtcggcgagccgattgtcgagtctgaacgggtgaactgtcaccac
aactacaccgagcccgagcgccacttcggtcgcgacgtgtggctctctcgaaagggtgcc
atcgacgcgaccctgggcacccctggtctggtgccagggtcgatgggtacgcgttcatat
gtcgtcgcgggcaaaggcaacacgctcgcgctccactcgtcgccgcacggtgccgggcgc
gaatactcgcgttccgctgcgcgtcgaacattcacccgagcggaactcgacatcgctatg
gagggcatcgaatggcggccgacagacgcgtttctcgacgagattccctctgcctacaaa
gacatcgatgtggtcatggatgatgccagcagcctcgtggaggtacgccacactctccga
cagatcatcaacgtgaagggcgattga
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