Subtercola sp. PAMC28395: KPL76_09735
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Entry
KPL76_09735 CDS
T07261
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
subt
Subtercola sp. PAMC28395
Pathway
subt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
subt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPL76_09735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
subt03019
]
KPL76_09735
Messenger RNA biogenesis [BR:
subt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPL76_09735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
BetaGal_ABD_1
Motif
Other DBs
NCBI-ProteinID:
QWT23047
LinkDB
All DBs
Position
2110084..2111760
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AA seq
558 aa
AA seq
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MPNAVYEPLALKPDTLRITPIGGLGEIGRNMTVFEINGKLLIVDCGVLFPEETQPGVDLI
LPDFSLVRDRLNDVVGIVLTHGHEDHIGAVPYLLRHKNDIPLIGSGLTLALVEAKLKEHR
IKPYTYQVKEGQTEQMGPFELEFVAVNHSIPDALAVAIKTVAGVVLHTGDFKMDQLPLDD
RITDLRAFARLGEAGVDLFLVDSTNADVPGFTPSERTIGPVLENVIAKAPRRVIVASFSS
HVHRVQQVLDAAHANGRRVALLGRSMVRNMGIAAELGYLKVPEGVLVDFKKAGDIPDDKI
VYMSTGSQGEPMAVLSRMANLEHQIEVGPGDTVILASSLIPGNENAVYRVINGLTKLGAT
VVHKGNAKVHVSGHAAAGELLYCYNILKPKNVMPVHGEYRHLVANAQLAIETGVPESNTI
LADDGTVVDLKDGVATIVGQYDLGFVYVDGNSVGEITDDDLKDRRILGEEGFISIIVVIE
ANTGRIIVGPEIHAKGFAEGDVVFDKVKPKIAAALAEAVGNGTRDTHALQQVVRRTVGRW
VNTSFRRRPMIVPVVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacgccgtatacgaacccctggccctgaagccggacaccctcagaatcaccccg
atcggcggtctcggcgagatcggccgcaacatgaccgtcttcgagatcaacggcaagctg
ttgatcgtcgactgcggcgtgctcttccctgaagagacccagcccggtgtcgacctgatc
ctgccggacttctcactcgtgcgcgaccggttgaacgatgtcgtcggcatcgttctcacc
cacggccacgaagaccacatcggcgccgttccgtacctgctccgccacaagaacgacatc
cccctcatcggctccggtctcaccctcgcgctcgtcgaggcgaagctcaaagagcaccgg
atcaagccgtacacctaccaggtgaaagaaggccagaccgagcagatgggcccgttcgaa
ctcgagttcgtcgcggtgaaccactcgattccggatgccctggccgtcgccatcaagacc
gttgccggtgtcgtgctccacaccggtgacttcaagatggaccagctcccgctcgacgac
cgcatcaccgacctgcgggccttcgcgcgtctcggtgaggccggcgtcgacctgttcctg
gtggactcaaccaacgccgacgttcctgggttcacgccgtctgagcgcaccatcgggccg
gtgctcgagaacgtgatcgccaaggctccccgccgggtcatcgtcgccagcttctcgtct
cacgtgcaccgcgtgcagcaagtgctcgatgccgcgcacgcgaacgggcgccgcgtggcg
cttctcggccgctccatggtccgcaacatgggcatcgcagccgaactcggctacctcaag
gttcccgagggcgtccttgtcgacttcaagaaggcgggcgacatccccgacgacaagatc
gtctacatgtcgaccggttcgcagggtgagcctatggccgtcctgtcgcggatggccaac
ctcgagcaccagatcgaagtcgggcccggagacacggtcatcctggcgtcgtcgctcatc
cccggcaacgagaatgccgtgtaccgagtcatcaacggactcaccaagctcggtgcgacc
gtcgtgcacaagggcaacgccaaggtgcacgtctcgggtcacgctgccgcgggcgagttg
ctctactgttacaacatcctgaagccgaagaacgtcatgccagtgcacggcgagtaccgg
cacctggtggcgaacgcgcagctcgccatcgagacgggtgtgccagagagcaacacgatc
ctggcggatgacggcaccgtcgtcgacctcaaagacggcgtcgccaccatcgtcggccag
tacgacctcggtttcgtctatgtcgacggcaacagcgtcggtgagatcaccgatgacgac
ctcaaagaccgccgcatcctgggcgaagagggcttcatctccatcatcgtcgtcatcgag
gcgaatacgggccgcatcatcgtcggtccggagatccacgccaagggattcgccgaaggc
gacgtcgtcttcgacaaggtcaagccgaagatcgccgctgcattggccgaagccgtgggc
aacggcacccgtgacacgcacgccctgcaacaggtcgtgcgccgcaccgtcggccgctgg
gtgaacacctccttccgtcgtcgcccgatgatcgtgccggtcgtcatcgaggcatag
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