Subtercola sp. PAMC28395: KPL76_14260
Help
Entry
KPL76_14260 CDS
T07261
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
subt
Subtercola sp. PAMC28395
Brite
KEGG Orthology (KO) [BR:
subt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
subt03019
]
KPL76_14260 (hrpA)
Enzymes [BR:
subt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KPL76_14260 (hrpA)
Messenger RNA biogenesis [BR:
subt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KPL76_14260 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
AAA_16
AAA_30
nSTAND3
AAA_23
T2SSE
NACHT
SLFN-g3_helicase
TsaE
MVD-like_N
ABC_tran
ResIII
PhoH
NCH3
Motif
Other DBs
NCBI-ProteinID:
QWT23819
UniProt:
A0A975SGV8
LinkDB
All DBs
Position
3119648..3123682
Genome browser
AA seq
1344 aa
AA seq
DB search
MNAESIYFPPELPVSQLREEIARTIAANQVVIVAGETGSGKTTQLPKICLELGRTSIGHT
QPRRIAARTIAERIAEELGQEVGDRVGYQVRFTDTVGPNTQIKLMTDGILLNEIHRDRLL
TKYDTIIIDEAHERSLTIDFLLGYLRQLLPKRPDLKVIVTSATIDPGSFSRHFGGAPIIE
VSGRTYPVEVRYRPLVADGEVSDDVDDESDDDEAAPARRASNGNSGTRSGGGPNGGPAAR
PALNRDPLDAVNEALDELAREGDGDVLVFFSGENEIRDAEEAIRGRLNSGGGGALGAATE
VLPLYGRLSSADQHKVFQKSSAPGIRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYS
VRSKVQRLPIEAISQASANQRAGRSGRTSDGICIRLYSEDDYLARPEFTEPEILRTNLAA
VILQMISLGLGDIASFPFLQPPDSRGIKDGLDLLSELGAINPPSDAKRAGRGVDRSGGGR
NRENPGRSATDSSVDSSARPGTASAVPTLTRVGRDLSRMPIEPRFARMVIESKNHRTSRE
VMIIVSGLTVQDPRERPLERRQRADELHARFTDVSSDFLSLLNLWNYLEEKQRELSSSAF
RRLCKAEHLNYVRVREWQDVFRQLRQLSKPLNLTIGEPSVNPDGIHRSILSGLLSHIGLK
DVAKKDYVGARQTRFSIFPGSALAKKQPNSVMSAELVETSRLFARMNATIDPAWAESLAG
DLCKRTYSEPHWEKKQGAVVAYERVTLYGVPIVPKRRVQFSRIDPAYARELFIRHALVEG
DWESQHAFDRDNRRFRSELAEIEERSRRRDLLLDDEAVFEFYDARVPREVNTARSFDGWW
KKAKYDTPELLTMTLTSLVPEGAPEIDEAKFPATWQQGDQQLALSYRFEPGTEDDGVSVT
VPLTLLPRLEPSGFESQVPGFRDELVTALIRSLPKNIRKNFVPATDWAKKLLLELPVHDT
AGTGSPGSAGSAGSASFVAALAATMSRLAYTPVTAADFDLARIPSHLSVSFRVVDDRGKT
LAASKDLGSLQSRFKGAARESVARASGAAASLIERRGITTWDFDELPQHLDTKQPGSVIR
AYPAIVDEKTSVAIRLVTTPAEAARLTPAGVRRLLLLGVASPVSYVREHLSQNEKLVLAT
SPYPSIQALFDDCLLAAADHVLRTAHPDGRVFTRGEFEAVRDTLSSSIIDLMYQTVATVA
TSLTRARDAERALKKVTSVTLLTALADARSQLGNLVFAGFIASMGIDQLSNLPRYLTGIE
QRLQKLPDAPARDRAWMTEAQNATARYEAAGGVLPLPLDAWLAIGAPVVKARWMIEELRI
SLFAQSLGTAEPVSLQRIVKLLGT
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgagtcgatctacttcccgcccgagctgcccgtcagccagttgcgcgaagag
atcgcacgcacgatcgccgcgaaccaggtcgtcatcgtcgccggcgagaccgggtccggc
aagacgacccagttgccgaagatctgcctggagcttggcagaacgagcatcgggcacacg
cagccccggcgcatcgcggcacgcacgatcgccgaacgcatcgcggaggagctcggccag
gaggtcggcgaccgcgtcggctaccaggtgcgcttcaccgacacggtgggaccgaacacc
cagatcaagctgatgaccgacggcattctgctgaacgagatccaccgcgaccggctgctg
acgaagtacgacacgatcatcatcgatgaggctcacgagcgcagcctcaccatcgacttc
ctgctcgggtacctgcgccagctgctgcccaagcgacccgacctcaaggtgatcgtcacc
tcggcgacgatcgacccggggagcttctccaggcacttcggcggggcgccgatcatcgag
gtgtctgggcgcacctacccggtcgaagtacggtatcgcccgctcgtcgccgacggcgag
gtgagcgacgacgtcgacgatgagagtgacgacgatgaagcggcgcctgctcggcgcgcg
tcgaacggcaacagcggtacgcgttcgggcgggggcccgaatggcgggccagcggcacgg
cctgcactgaatcgcgaccctctcgacgccgtgaacgaagcgctcgacgagctcgctcgc
gaaggcgacggcgacgtgctggtgttcttctccggcgagaacgagatccgggatgctgaa
gaggccatccgcgggcgtctcaactcgggtgggggcggggctctcggtgcggcgaccgag
gttctgccgttgtatggccggttgtcgtcggccgaccagcacaaggtgttccagaagtcg
tcggccccgggcatccgtcgccgtatcgtgctcgcgaccaacgtcgcggagacaagcctc
acggtacccggcatcaagtacgtgatcgacaccggtaccgcccgtatcagtcgctacagt
gtgcgctcgaaggtgcagcggctgcccatcgaggccatttcgcaggcttcggcgaaccag
cgcgcggggcggagtgggcgcacaagcgacggaatctgcatcaggctctactcagaagac
gactatctggcgaggcctgaattcaccgaaccggagatcctgcgcaccaacctggccgca
gtgatcctccagatgatctcgctgggccttggcgacattgcgagctttccgtttctgcag
ccgccggattcgcgcggcatcaaagacggcctggacctgctgagcgaactgggcgcgatc
aaccctccgagtgatgccaagcgtgcagggcgcggtgtcgatcgaagtggcggcggtcgc
aaccgggagaacccgggtcgcagcgcgacagattcttccgttgacagcagcgcacgaccc
ggcaccgcgagcgccgtaccgacgctcacccgcgtcggccgcgacctctcgcgcatgccg
atcgaaccgcggttcgcccgcatggtcatcgagtcgaagaaccaccgtacgagccgggaa
gtcatgatcatcgtgtcggggctgacggtacaggatcctcgcgaacgcccgctcgagcga
cgccagcgggccgacgaactgcacgcccggttcaccgacgtcagcagcgacttcctctca
ctgctgaacctctggaactacctcgaggagaaacaacgtgagctctcttccagtgccttc
cgccggctctgcaaggccgaacacctgaactacgtgcgggtgcgtgaatggcaggacgtc
tttcgtcagctgcgccagctcagcaaaccgctgaacctcacaatcggcgagccgtcggtc
aaccccgacgggatccaccgttcgatcctctccggcctgctgtcgcacatcggcttgaaa
gatgtggcgaagaaggactacgtcggggcgcgccagacccggttcagcatctttccgggg
tcggccctcgcgaagaagcagcccaactcggtgatgagcgccgagctggtcgagaccagc
cgcctcttcgcgcgaatgaatgcaacgatcgatccggcctgggcggagtcgctcgccggc
gacctctgcaaacgcacctactccgaaccccactgggagaagaagcagggcgcagtcgtc
gcctacgagcgggtcacactctacggagtgcccatcgttcccaagcgccgcgtgcagttc
tcgcggatcgaccctgcgtatgctcgcgagctcttcattcggcacgctctcgtcgagggc
gactgggaatcacagcacgccttcgaccgcgacaaccgccggttccgctcagaactcgcc
gaaatcgaggagcgcagccgtcgccgtgacctgctgctcgacgacgaggccgtcttcgag
ttctacgacgcgagggttccccgcgaggtgaacaccgcccggagcttcgacggctggtgg
aagaaggcgaagtacgacacgccagagctgctcacgatgactctcacctcgctggttccc
gaaggcgcgcccgagatcgacgaggcgaagttcccggccacctggcagcagggcgaccag
cagcttgccctctcgtaccgcttcgaaccgggcactgaagacgacggcgtcagcgtcacg
gttccgctcaccctgctgccccgcctcgagccctccggcttcgaatcgcaggtgccgggg
ttccgcgacgaactcgtgaccgcgctcatccgctctctgcccaagaacatccgcaagaac
ttcgtgccggcgaccgactgggcgaagaagctcctgctcgagctgccggtccacgacacg
gctggaacgggttcaccgggttcagcgggttcagcgggttcagcatccttcgtcgccgcg
ctggccgccaccatgtcgcgcctcgcctacacgcccgtcacggctgccgacttcgacctc
gcgcgcattccgtcgcacctctcggtctccttccgggtggtggatgaccggggcaagacg
ctcgcggcatcgaaagacctcggctcgttgcagagccgcttcaagggcgccgctcgcgag
agtgtggcccgggcatccggtgcggcagccagcttgatcgaacgccggggcatcaccacc
tgggacttcgacgagctgccgcagcacctcgatacgaaacagccgggcagcgtgatccgt
gcctatcccgcgatcgtcgacgagaagacgtcggtggcgattcgcctggtgacgacgcca
gcagaggcggcacggctcacccctgccggcgttcgcaggctgctgctgctcggcgtggcc
tcccccgtctcgtatgttcgcgagcacctcagccagaacgagaaactggttctggcgacg
agcccgtacccgagcatccaggcgctcttcgacgattgccttcttgccgcagccgaccat
gtactgcgcaccgcacacccggacggaagggtcttcacgcgcggagaattcgaggccgtt
cgcgacacgctctcgtcgagcatcatcgacctcatgtaccagacagtcgcaaccgtcgcc
acgagcctaacgagggccagggatgccgaacgggcgctcaagaaggtcaccagcgtgaca
ctgctgaccgctctcgccgacgcacggagccagctcggaaacctcgtcttcgccggcttc
atcgcctcgatgggcatcgaccagctgagcaacctgccgcgatacctcaccgggatcgag
cagcgcctgcagaagctgcccgacgctcccgcccgcgaccgcgcgtggatgacagaggcc
cagaacgcgaccgcgcgctacgaggccgccggcggcgtgcttccgctccctctcgacgcc
tggctggccatcggggctccggtggtgaaggcgcgatggatgatcgaagaactccggatc
agcctcttcgcccagtcgctcggcacagccgagcctgtttcgctgcaacggatagtgaag
ctcttgggaacgtga
DBGET
integrated database retrieval system
