Staphylococcus aureus subsp. aureus ED133: SAOV_0525
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Entry
SAOV_0525 CDS
T01869
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sue
Staphylococcus aureus subsp. aureus ED133
Pathway
sue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAOV_0525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sue03400
]
SAOV_0525
Enzymes [BR:
sue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAOV_0525
DNA repair and recombination proteins [BR:
sue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAOV_0525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
Glyco_hydro_115
SNF2-rel_dom
UB2H
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ADI97055
LinkDB
All DBs
Position
542893..546399
Genome browser
AA seq
1168 aa
AA seq
DB search
MTILTTLIKEDNHFQDLNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQ
ADKLETDLLQFVDAEELYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPL
NGLKKWLTPVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIID
IFPLIGEPIRIELFDTEIDSIRDFDVETQRSKDNIKEVDITTASDYIITEEVIRHLKEEL
KSAYENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIDYFQKD
AIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQNFIKYDDFETLIEGYPVTYFS
LFATTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLVETETKVERMQA
MLSEMHIPSITKLHRSMSSGQAVIIEGSLSEGFELPDMGLVVITERELFKSKQKKQRKRT
KAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTDQLFVP
VDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ
YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAA
FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTG
FVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRT
LHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSI
YEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVD
LNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARLLDIVE
IKVHALHSGITLIKDKGKIIDIHLSVKATENIDGEVLFKATQPLGRTMKVGVQNNAMTIT
LTKQNQWLDSLKFLVKCIEESMRISDEA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacaatattgacaacacttataaaagaagataatcattttcaagaccttaatcaggta
tttggacaagcaaacacactagtaactggtctttccccgtcagctaaagtgactatgatt
gctgaaaaatatgcacaaagtaatcaacagttattattaattaccaataatttataccaa
gcagataaattagaaacagatttacttcaatttgtagatgctgaagaattgtataagtat
cctgtgcaagatattatgaccgaagagttttcaacacaaagccctcaactgatgagtgaa
cgtattagaactttaactgcgttagctcaaggtaagaaagggttatttatcgttccttta
aatggtttgaaaaagtggttaactcctgttgaaatgtggcaaaatcaccaaatgacattg
cgtgttggtgaggatatcgatgtggaccaatttcttaacaaattagttaatatggggtac
aagcgggaatccgtggtatcgcatattggtgaattctcattgcgaggaggtattatcgac
atctttccgctaattggggaaccaatcagaattgagctatttgataccgaaattgattct
attcgggattttgatgttgaaacgcagcgttcaaaagataatattaaagaagtcgatata
acaactgcaagtgattatatcattactgaagaagtgattagacatcttaaagaagagtta
aaaagtgcatatgaaaatacaagacccaaaatagataaatcagtgcgcaatgatctgaaa
gaaacgtatgaaagctttaaattattcgaaagtacatactttgatcatcaaatactacgt
cgtttagtagcgtttatgtatgaaacaccttcgacaattattgattatttccaaaaagat
gcaatcattgcggttgatgaatttaatcgtattaaagaaactgaagaaagtttaacagta
gagtctgattcgtttattagcaatattattgaaagtggtaatggatttataggacaaaat
tttataaaatatgatgattttgaaacattgattgaaggctatcctgtcacttatttttca
ttattcgctacaacaatgccgataaaactaaatcatattattaaattttcatgtaaacct
gtccaacaattttatgggcaatatgatattatgcgttctgaatttcaacgatatgttaat
caaaactatcatatcgtggttttggtcgaaaccgaaactaaagttgaacgtatgcaagcg
atgttaagtgaaatgcatattccatcaataacaaaattgcatcgctcaatgtcatcgggg
caagcagtgattattgaaggcagtttatctgaaggatttgaactacctgatatgggatta
gttgtcattactgagcgtgagctttttaaatcaaaacagaaaaagcaacgaaaacgtacg
aaagctatctcaaatgctgaaaaaattaagtcttaccaagatttaaatgtgggagattat
attgttcatgtgcatcatggtgttggtagatatttaggtgttgagacgctcgaagtaggg
caaacacatcgtgattatattaaattgcaatataaaggtacggatcaactatttgttcca
gtagatcaaatggatcaagttcaaaaatatgtagcttcggaagataagacgccaaaatta
aataaactcggtggcagtgaatggaaaaaaacaaaagctaaagttcaacaaagtgttgaa
gatattgctgaagagttgattgatttatataaagaaagagaaatggcagaaggttatcaa
tatggggaagacacagctgagcaaacaacatttgaattagattttccatatgaacttacg
cctgaccaagcgaaatctatcgatgaaattaaagatgacatgcaaaaatcgcgtccaatg
gatcgcttgctatgtggtgatgttggttatggtaaaactgaagttgcagtgagagcagca
ttcaaagctgtaatggaaggaaagcaggttgcatttttagttcctacaactattttagct
caacaacattatgagacgttaattgagcgtatgcaggattttcctgttgaaattcaatta
atgagtcgttttagaacgcctaaagagataaaacaaactaaggaaggacttaaaactggg
tttgttgacatagtggttggtacacacaaattacttagtaaagatatacagtataaagat
ttagggctgttgattgtagatgaagaacaacgatttggtgtacgccataaagagcgtatt
aaaacattaaaacataatgtagatgtactaactttgactgcaactccaatacctagaaca
ttgcatatgagtatgctaggtgtgcgcgatttgtcagtgattgaaacgccgccagaaaat
cgtttcccagttcaaacatatgtattagaacagaacatgagttttatcaaagaagcttta
gaaagagaactatctcgtgatggccaagtattttatctttataataaagtgcaatccatt
tatgaaaaacgagaacaactccagatgttaatgccagatgctaacattgcagttgctcat
ggacaaatgacagagcgcgatttagaagaaacgatgttaagttttatcaataatgaatat
gatattttagtaacgacgacgattattgaaacaggtgtcgatgtcccaaatgcaaatact
ttgatcattgaagatgcagatcgctttggattgagtcagttgtatcaattaagaggtcgt
gttggtcgttcaagtcgtattggttatgcatacttcttacatccagcaaataaggtacta
actgagactgcagaagatcgattacaagcgattaaagaatttacggagttaggctcagga
tttaagattgcgatgcgtgatttgaacattcgtggtgctggtaatttgttaggtaaacaa
cagcacggctttattgatacagttggatttgatttgtacagtcaaatgttagaagaagct
gtaaatgaaaaacgtggtattaaggaaccagaatctgaggtgccagaagtcgaagttgat
ttaaacttggatgcatatttgccaacagaatatattgcaaatgaacaagctaaaattgaa
atttataaaaagctacgaaaaactgaaacatttgatcaaattatcgacattaaagatgaa
ttaattgatcgtttcaatgattatcctgttgaagtagcacgtttgcttgatatagtggaa
ataaaagtacacgcattacattcaggtatcacgttgattaaagataaagggaaaataatt
gatattcatttatctgtaaaagccactgaaaatattgatggcgaagtgcttttcaaagca
acacaacctttaggtagaacaatgaaggttggtgttcaaaataatgcaatgacaattact
ttaacgaaacaaaatcaatggcttgatagtttgaagttcttagttaagtgcattgaagaa
agtatgagaatcagtgatgaagcataa
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