Staphylococcus aureus subsp. aureus LGA251 (MRSA): SARLGA251_07140
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Entry
SARLGA251_07140 CDS
T02085
Symbol
rnr
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
suf
Staphylococcus aureus subsp. aureus LGA251 (MRSA)
Pathway
suf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SARLGA251_07140 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suf03019
]
SARLGA251_07140 (rnr)
03016 Transfer RNA biogenesis [BR:
suf03016
]
SARLGA251_07140 (rnr)
Enzymes [BR:
suf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SARLGA251_07140 (rnr)
Messenger RNA biogenesis [BR:
suf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SARLGA251_07140 (rnr)
Transfer RNA biogenesis [BR:
suf03016
]
Prokaryotic type
tRNA degradation factors
SARLGA251_07140 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
Rho_RNA_bind
OB_Dis3
TBPIP_N
RNase_II_C_S1
OB_RNR_1st
S1_RRP5
HemN_C
Motif
Other DBs
NCBI-ProteinID:
CCC87482
LinkDB
All DBs
Position
822205..824577
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AA seq
790 aa
AA seq
DB search
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERSKTDRY
QKKHSSKGQSKLIKGTLSQNKKGFAFLRPEDKDMEDIFIPPTKINRALDGDTVIVEIHQS
KGEHKGKIEGEVKSIEKHSVTQVVGTYSQARHFGFVIPDDKRIMQDIFIPKGQSLGAVDG
HKVLVQITKYADGSDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEATP
DNIEDSEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTEG
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDGSGRVVKHE
IFDSVIHSDYRMTYDAVNQIITEKDPTIREQYNEITPMLDLAQDLSNRLIQMRKRRGEID
FDISEAKVLVNEDGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRVHEQ
PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELA
EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI
ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDR
SQRPARGKTIQAKTRGKSLDKSKSDDKGHKKKGKQRKGKNERKNDRSGNSKHKPFYKDKS
VKKKARRKKK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatcaatagaagagattattaatcaacctgaatatgaacctatgtca
gtttcagattttcaagatgcattaggtttaagcagtgccgactcgtttagagatttaatt
aaggtgcttgtggagttagaacaatcaggattaatcgaacgttcgaaaacagatagatac
caaaaaaagcatagttccaaaggtcaatcgaaattaattaaaggaacattaagtcaaaac
aaaaaaggttttgctttcctaagacctgaagacaaagatatggaagatatatttattccc
ccaacgaaaattaatcgtgccttggatggagatactgttattgtagaaatccatcaatca
aaaggtgagcataaaggtaaaattgaaggggaagttaagtcaattgagaagcattcagta
actcaagtggttggtacgtatagtcaggctagacattttggttttgtcattccagatgat
aaacgaattatgcaagatattttcattcctaaaggacaaagcttaggtgcagtagatggt
cacaaagtattagttcaaattactaagtatgctgacggttcagataatccagaaggacat
gtttctgctattttaggacataaaaatgatcctggcgtagatattttatctattatctat
caacatggcatagaaattgaatttcctgatgaagtgttacaagaagctgaagcaacacca
gacaatatagaagatagtgaaattaaaggacgtcatgatttacgtgatgaattgaccatc
actattgatggcgcggatgctaaagacttagatgacgcaattagtgttaaaaagttagcg
aacggtaatacacaattaactgtaagtattgctgatgtcagctattatgtaacagaaggt
tctgcattggataaagaggcatatgatagagctacaagtgtatatcttgttgaccgtgta
attccaatgattccacatcgattaagtaatggtatttgttcattgaatcctaatgttgat
cgtttaactttaagctgtcgcatggaaatcgatggtagtggtcgcgttgtaaaacatgaa
atctttgatagtgtgattcattctgattatcgaatgacgtatgatgcggtaaatcagatt
attactgaaaaggatcctacgattcgagagcagtataatgaaattacgcctatgctagat
ttagcacaagatttatcaaatcgtttaattcaaatgagaaaacgccgtggtgaaattgat
tttgatattagcgaagcgaaagtactagttaacgaagatggtatacctacagatgttcaa
ttgagacaacgtggtgaaggcgaacgtcttattgagtcatttatgttaattgcaaatgaa
acagttgctgaacattttagtaagttagatgtaccatttatttaccgagtgcatgagcaa
cctaaatcagatcgcttaagacaattctttgattttattacaaactttggcatcatgatt
aagggtactggcgaagatattcatccaacaacacttcaaaaggttcaagaagaagtagaa
ggtcgacctgaacaaatggtcatttcaacaatgatgttacgttcaatgcaacaagcgcat
tatgatgatgtgaacttgggacattttggcttatcagctgaatattatacgcattttaca
tcaccaataagacgttatcctgatttaacagttcatcgtttaatccgtaagtatttaatt
gagaaatcaatggataacaaagaagtgaagcgttgggaagacaaattgcctgagttagct
gaacatacttctaaacgtgaacgtcgtgctattgaggcagaacgtgacactgatgaattg
aaaaaagcagaatatatgattcaacatattggtgatgaatttgaaggtattgtcagctca
gtagctaacttcggtatgttcattgaattgccaaatacgatagaaggtatggttcatatt
gcgaatatgactgatgattattaccgttttgaagagcgtcaaatggcattaattggtgag
cgtcaagctaaagtatttagaattggggacacagttaaggttaaagtgacgcatgttgat
gtagatgaacgattaattgattttcaaattgtaggtatgcctttaccgaaaaatgatcga
tcacagcgcccagcgcgaggtaaaacaatacaagctaaaacgcgtggtaaatcattagat
aaatcgaaatctgatgataaaggtcataagaaaaaaggtaagcaacgtaaaggtaaaaat
gaacgtaaaaatgacagatcaggaaacagtaaacataagccattttataaagataaaagt
gtgaaaaagaaagcacgtcgtaagaaaaaataa
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