Sulfurihydrogenibium sp. YO3AOP1: SYO3AOP1_0263
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Entry
SYO3AOP1_0263 CDS
T00715
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sul
Sulfurihydrogenibium sp. YO3AOP1
Pathway
sul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYO3AOP1_0263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sul03021
]
SYO3AOP1_0263
03400 DNA repair and recombination proteins [BR:
sul03400
]
SYO3AOP1_0263
Enzymes [BR:
sul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYO3AOP1_0263
Transcription machinery [BR:
sul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYO3AOP1_0263
DNA repair and recombination proteins [BR:
sul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYO3AOP1_0263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_5
Ribosomal_TL5_C
RAD51D_N
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
ACD65908
LinkDB
All DBs
Position
complement(281168..282142)
Genome browser
AA seq
324 aa
AA seq
DB search
MSLLDFVMPTKIYWDEATKTDTYGKLYVEPLERGFGITIGNALRRVLLSSLPGGAITAVK
IMGVPHEFTTIKGVLEDVVEIVLNLKQIRLKIDENIERDFAILEAENVGKVYAKDIKFPA
GIELVTPDVHICTISEPTKLQMEFRVERGIGYKTVEELEPISEIGWIIIDTAFSPIRKVA
FNVEPTRVGDKTDYDKLILEIETDGTITPDEALTKASNILIDHFNILQKPTVKKVQVIKK
TVAPKSEEIKIEEDKLSLSIDELEISSRAINTLRKLGINTIGDLVRLSEEDLREAKSIGR
KSLKEIKDALAEMGLELAPSKLTS
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtcattattagattttgtaatgccaacaaaaatttactgggatgaagcaactaaaaca
gatacatacggaaagctttatgttgaaccattagaaagaggatttggtataactattggt
aatgccttaagaagagttttactctcttcattgcccggaggagcaattacggctgttaag
ataatgggtgttcctcatgaatttacaacaattaaaggtgtactagaagatgtagttgaa
atagtattaaatttaaaacaaataagattgaaaatagatgagaatatagaaagagatttt
gctatattagaagcagaaaatgtaggtaaagtatatgcaaaagatataaaatttccagca
ggaatagagttagttacaccggatgtgcatatctgtacaatctctgaaccgacgaagttg
caaatggaatttagagtagaaagaggcattggttataaaacagtcgaagaattagaacct
atttcagaaataggttggataattatagatacagctttctctccaattagaaaggtcgcg
tttaatgtagaacctacaagggttggagataaaacagattatgataaattaattttggaa
attgaaacagacgggacaattacaccggatgaagcattaacaaaggcatcaaatattctt
attgatcattttaatattttacaaaaaccaactgttaaaaaagttcaagtaattaagaaa
accgtagctccaaaatctgaagaaataaaaattgaagaagataaactttctttatctata
gatgaacttgaaatttcttcaagggctataaatactcttagaaagctgggaataaacaca
attggtgatttagtgagattgtctgaagaagatttaagagaagctaaaagcattggtaga
aaatctttaaaagagatcaaagatgctttagcagaaatgggattagaattagccccatca
aaattaacatcttaa
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