Sulfurihydrogenibium sp. YO3AOP1: SYO3AOP1_0978
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Entry
SYO3AOP1_0978 CDS
T00715
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sul
Sulfurihydrogenibium sp. YO3AOP1
Pathway
sul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYO3AOP1_0978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sul03021
]
SYO3AOP1_0978
03019 Messenger RNA biogenesis [BR:
sul03019
]
SYO3AOP1_0978
Transcription machinery [BR:
sul03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SYO3AOP1_0978
Messenger RNA biogenesis [BR:
sul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SYO3AOP1_0978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
DUF7440
AAA_22
AAA_25
OB_RNB
NACHT
DUF3086
Motif
Other DBs
NCBI-ProteinID:
ACD66599
LinkDB
All DBs
Position
1010977..1012248
Genome browser
AA seq
423 aa
AA seq
DB search
MVDLSTITPESLKEKTLAELKKLAEEIGVEKITGLKKDELIEKIIEKKEEKEGLVKINGV
LEILPEGFGFIRFLENNYAPSPQDIYVSPSQIKRFGLKTGDTIIGVARNPKEGEKYRALV
RIDRVGSLPVEELKKRPSFDKLIPYHPTERLNLEYDPSDLSTRVVSLVAPIGKGQRGLIV
APPKAGKTVLIQRIAKAIIKNHPEIHLIILLIDERPEEVTEMRRIVGSGAEVVASTFDEP
PERHIQISELVIEKAKRIVEEGRDVVILLDSMTRLARASNAVTPPSGRVLSGGIEATALQ
RPKKFFGAARNIENGGSLTILSTALVETGSRMDDVIFEEFKGTGNMELYLDRRLMERRIF
PAINISKSGTRKEELLLEDWQLQRLWVLRKFLSTMDEVEAMEFLLSKLSKFKTNDEFLRS
MNA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggtagacttatcaaccatcacacctgaatcattgaaagaaaaaacattggcagaatta
aaaaaattagctgaagagatcggtgtagaaaaaataacaggactaaaaaaagatgagctt
atagaaaaaatcatagagaaaaaggaagaaaaagaaggtttagtcaagataaatggtgtt
ttagaaatccttcctgaaggttttggatttattagatttcttgaaaacaattacgcacca
agtccacaagatatatatgtttcaccttctcagataaaaagatttggacttaaaaccgga
gatacaattatcggagtagcaaggaatccaaaggaaggtgaaaaatacagagcattagtc
agaatagatagagttggaagtcttccggtagaagagttaaagaaaagaccatcttttgat
aagcttatcccataccatccaacagaaagattgaatttagaatacgacccatctgattta
tcaactagggttgttagccttgtagcacctattggtaaaggccaaagaggattgatagtt
gcaccgcctaaagccggtaaaacagttttaatccaaagaatagcaaaagctataataaag
aaccatccagaaattcatttaataatccttcttatagatgaaaggcctgaagaagttaca
gaaatgagaagaatagtaggctccggggcagaagtagtagcatctacgtttgatgaacca
ccagaaagacacatacaaatctctgagcttgtaattgaaaaagcaaaaaggatagtagag
gaaggtagagatgttgtgatcttacttgactcaatgacaaggcttgcaagagcttcaaac
gctgttacaccaccatccggtagagttttatccggtggtattgaagcaacggcattacaa
agacctaaaaaattctttggggcagctcgtaatatagaaaacggcggaagtcttacaatt
ctctcaacagctcttgtggaaactggttcaagaatggacgatgtaatatttgaagaattt
aaaggaactggcaatatggagctttacttagacagaagattaatggaaagaagaattttt
ccagcaataaatataagtaagtctggaacaagaaaagaggaacttttactggaagactgg
caactgcaaagattatgggtattgcgtaaattcttatctacaatggatgaagttgaagca
atggaatttttgttaagcaaactttccaaatttaagacaaatgacgagtttttaaggtct
atgaatgcttga
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