Sulfitobacter sp. CB2047: IV89_000872
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Entry
IV89_000872 CDS
T10375
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sulb Sulfitobacter sp. CB2047
Pathway
sulb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sulb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IV89_000872 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sulb03021
]
IV89_000872 (rpoC)
03400 DNA repair and recombination proteins [BR:
sulb03400
]
IV89_000872 (rpoC)
Enzymes [BR:
sulb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IV89_000872 (rpoC)
Transcription machinery [BR:
sulb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IV89_000872 (rpoC)
DNA repair and recombination proteins [BR:
sulb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IV89_000872 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
ULO20931
LinkDB
All DBs
Position
915124..919371
Genome browser
AA seq
1415 aa
AA seq
DB search
MNQELTNNPFNPVAPMKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEAEADQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTLEREGMPGEGMVFGSVEEVEHAL
GAGAIHLHSKIKARIKQIDAEGNEVMKRYDTTPGRIRLGALLPLNAKAPFDLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFRAGISFGKDDMLIPETKWTLVDETRE
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGAISAERRNDDGAVMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMHDCGTETAITAEAAVNDGEVVSSLAERLLGRV
AADDILRPGTDEVLVPAQTVIDERLADIIDEAAVQSARIRSPLTCEAEEGVCAMCYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQSGKVVFENAQ
TLENAAGEIMVMGRNMKLAIVDDNGDERASHKVGYGTKLFVKEGQSILRGDKLFEWDPYT
LPIIAEKSGMTKFVDLTSGIAVKDETDDATGMTQKIVIDWRAAPKGNELKPEIILVDADG
EPVRNDAGNPVTYPMSVDAILSVEDQTEIKAGDIVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRYGKDYKNKRRISIESSEDPDHKVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
VQDSGDTTLLKGEHVDKQEFDQACAKALSKGGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQQMRKVATDRDNVVIEARRE
EAEAAARLAAPEPTADDVVGGDVFDNVPSDDESRS
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaaccccgtcgcgccgatgaagacgttcgac
gaaatcaaggtctctctggcatcgccagagcggatcctgtcgtggtcgttcggtgaaatc
aagaaaccagaaaccatcaactaccggacgttcaagccagagcgtgacggcctgttctgc
gcgcgtatctttggcccgatcaaagactacgaatgcctgtgcggtaaatataagcgcatg
aagtatcgcggcgttgtctgcgagaaatgtggtgttgaagtcacgctgcaaaaggtccgt
cgcgagcgtatgggccacatcgagctggcgtcgcctgttgcgcacatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggacatgaccctgcgcgatctggaacgtgtt
ctttactttgaaaactacgttgtgatcgaacccggtctgacggatctcacctatggtcag
atgatgaccgaggaagagtatatggacgcgcaggatgcctatggcatggacgcgttcacc
gccaatatcggtgccgaagcgatccgcgaaatgctggccgccatcgatctggaagccgaa
gcggaccagctgcgtgccgatctgaaagaggcgaccggcgaactgaagcccaagaagatc
atcaagcgtctgaaagtcgttgaatccttcctcgagtctggcaaccggcccgagtggatg
atcatgaccgtcattccggtgatcccgccagagctgcgcccgctggtgccgctggacggt
ggccgtttcgcgacgtcggatctgaacgacctgtatcgccgcgtgatcaaccggaacaac
cgcttgaagcgtctgatcgaactgcgcgcgcctgacatcatcgtccgcaacgaaaagcgg
atgttgcaggaatccgtcgatgccttgttcgacaacggccgtcgcggccgcgtcatcact
ggtgccaacaagcgcccgctgaagtcgctgtccgacatgctgaaaggtaagcaaggtcgc
ttccgtcagaaccttttgggtaagcgcgtcgacttctccggtcgttcggtcattgtgact
ggccccgaattgaagttgcaccaatgcggtctgcccaagaagatggcgctcgagctgttc
aagccgtttatctactcgcgtcttgaagccaaaggtctgtcttccactgtgaagcaagcc
aagaagttggttgaaaaagagcgtcccgaagtgtgggacatcctcgacgaagtgatccgc
gaacaccctgtcatgctgaaccgtgcgcctaccttgcaccgtttgggcattcaggcgttc
gagccggttctgatcgaaggtaaagcgatccagcttcacccgctggtctgttccgccttt
aacgctgactttgacggcgaccaaatggctgtgcacgtgccgctttcgctggaagcacag
ctggaagcacgcgtcctgatgatgtcgacgaacaacgttctgtcgcctgcaaacggcgcg
ccgatcattgttccgtcgcaggatatgatcttgggtctgtactacacgaccctggaacgc
gaaggcatgccgggcgaaggcatggtgttcggctctgtcgaggaagtcgagcacgcgctt
ggtgccggtgcgatccacctgcactccaagatcaaggcgcggatcaaacagatcgatgcc
gaaggcaacgaggtgatgaagcgttacgacaccacgccgggccgtatccgccttggcgcg
ctgctgccgctgaacgccaaagcgccgttcgatctggtgaaccgtctgctgcgtaagaaa
gaagtgcagcaggtcatcgatacggtctaccgctactgtggtcagaaagaatccgttatc
ttctgtgaccagatcatgaccatgggcttccgtgaagctttccgtgccggcatttccttc
ggcaaggacgacatgctgatcccggaaaccaagtggaccttggtggacgaaacgcgcgag
caggttaaagactttgaacagcagtacatggacggcctgatcactcagggtgaaaagtac
aacaaagtcgtcgacgcctggtccaagtgtaacgacaaggtcaccgacgcgatgatgggg
gccatttcggccgaacgtcgcaacgatgacggcgcggtgatggagccgaattcggtctac
atgatggcgcactccggtgcgcgtggctcggtcacacagatgaaacagctgggcgggatg
cgcggtctgatggcaaagccgaacggcgacatcatcgagactccgattatctcgaacttt
aaagaaggtctgaccgttctggagtactttaactccacccacggtgcccgtaagggtctg
tcggataccgctttgaaaacagcgaactcgggttacctgacccgtcgtctggtggacgtg
gcacaggattgtatcgttcgtatgcatgactgtggcaccgaaaccgcgattacggccgaa
gcggctgtgaatgatggtgaggtcgtctcttcgctggcggaacgtctgttgggtcgcgtt
gcggccgatgacatcctgcgccccgggaccgacgaagtgttggtacctgcgcagactgtg
atcgacgaacgtctggctgacatcatcgatgaagcggctgttcaatccgcacggatccgc
agcccgctgacctgtgaggccgaagagggcgtctgcgccatgtgctatggtcgtgacctt
gcacgcggtacgctggtgaaccaaggtgaagctgtcggcattatcgctgctcagtcgatc
ggtgaacccggcacgcagctgaccatgcgtacattccacattggtggtgttgcgcagggt
ggccagcagtccttcctcgaggcatcgcagtccggtaaggttgtgttcgagaacgctcaa
acccttgagaacgccgcaggcgagatcatggtaatgggccggaacatgaagcttgccatc
gtcgatgataacggcgacgagcgtgccagccacaaggttggctacgggaccaagctgttc
gtcaaggagggtcagtcgatcctgcgcggcgacaagctgttcgaatgggacccctacacg
ctgccgatcatcgcggagaaatccggtatgaccaagttcgtcgacctgacgtcggggatc
gcggtcaaggatgaaaccgatgatgcaaccggtatgacacagaagatcgtgatcgactgg
cgtgcagcacccaaaggcaatgagctgaagcctgaaatcattctggtggatgccgatggc
gagccggtccgcaacgatgcgggcaacccggtgacctacccaatgtccgttgatgccatt
ctgtccgttgaggaccagactgaaatcaaggccggtgacatcgtcgcgcgtatcccgcgt
gaaggtgccaagaccaaggatattaccggtggtctgccacgtgttgcggaactcttcgag
gcacgtcgccccaaagaccacgcgatcatcgccgagatcgacgggtacgtccgctacggc
aaggactacaaaaacaagcgtcgtatctcgatcgagtcgtccgaggatccggatcacaag
gtcgaatacatggtacctaagggtaagcacattcccgttgcggaaggtgactttgtccag
aagggcgactacatcatggacggcaaccctgcgccgcatgacatcctcgcgattatgggt
gtcgaagcgctggctgactacatgatcgacgaagtgcaggatgtttatcgtctgcagggc
gttaagatcaacgataagcatatcgaagtgatcgtgcgtcagatgttgcagaagtgggaa
gtccaggacagcggtgataccaccctgttgaaaggcgaacacgtcgacaagcaagagttc
gaccaggcctgtgccaaagcgctgtccaaaggcgggcgtcctgcgcagggtgaaccgatc
ctgctggggatcaccaaggcgtcgctgcaaacccgcagcttcatctcggcggcgtccttc
caggaaaccacacgtgttctgaccgaagcatcggttcagggtaagcgcgacaagctggtt
ggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggtaccggtggtgcgacg
cagcagatgcgcaaggttgcgacagatcgtgacaacgtggtcatcgaggcccgtcgcgaa
gaagccgaagccgcagcacgtctggccgcgcccgagcctacagccgacgatgttgttggt
ggcgatgtcttcgacaacgttcccagcgacgacgaaagccgcagctaa
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integrated database retrieval system
