Sulfitobacter sp. CB2047: IV89_001674
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Entry
IV89_001674 CDS
T10375
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sulb Sulfitobacter sp. CB2047
Pathway
sulb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IV89_001674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulb03019
]
IV89_001674
03009 Ribosome biogenesis [BR:
sulb03009
]
IV89_001674
Enzymes [BR:
sulb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IV89_001674
Messenger RNA biogenesis [BR:
sulb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IV89_001674
Ribosome biogenesis [BR:
sulb03009
]
Prokaryotic type
rRNA processing factors
IV89_001674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ULO18711
LinkDB
All DBs
Position
1698498..1701413
Genome browser
AA seq
971 aa
AA seq
DB search
MPKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRLALMEEERAYAEAQAAKEDEDEKPKRRTRSRSRS
KSKAEDTVSDDATVSKDADATDSDQINGMQTVDLDDEEGSSPMERVAETPVEEPDGDDSK
AEGDTPKAANADAKDAAKPDADDQDDSDDADDSDDSPKAKDASSKDDSIESVADDDDHDD
LRTARKPRPKRYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARG
GGISRKITNAADRKKLKEIANEIQVPKGAGLIVRTAGAQRTKAEIKRDYEYLQRLWEQIR
ELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMPSHAKNV
KLYSETLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIE
QTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERRNNAAVEKLMKEKLKTDRARIQV
GRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLIRSDDNLALSILRQIEEEGTRKRS
REVLITAPVGIANFLMNQKREHIAHIEGRYGMAVRIEGDPALVSPDFSLEKFKTATRVVT
PIEHVVSVDTSIMDEVDDLDVDAEADADNADNEPTGNGNGGQNQHNGSDDDNDGEGKPKR
RRRRRRRRGGKSNGDDAANGENNGDSNTNGDNGDSDAPAEIADAKDDAKTDATADAASDD
AKPQDKPKRTRSRTRKPKADAAAEATVDADAKTSEDAKPAETTPADAEAAEDAPKPKPKR
TRTRKPKAAPVEAVEEAPKPEETPAPKEQPTPEPKPEPEVTPDAPTPEPAKEPTPIPTPE
PTPAQPSQPAEVEQTPAPTEVPDSTPTEMPPAQEIQPEPPVTEVPQPEATPQAEPEKPAK
PKRRGWWSLGG
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagaaaatgcttatcgatgccacccacgctgaggaaactcgcgttgttgtggtt
gacggaaacaaggtcgaagaatttgactttgaatcagagaataaacgccagctagctggc
aatatctacctcgcgaaagtcacgcgggtcgaaccttcgttgcaggccgcgtttgtggat
tatggcggcaaccgtcatggtttcctcgccttttcggaaattcaccccgattactaccag
atccccgtcgccgaccgtctggcgctgatggaggaagagcgtgcctatgccgaagcgcag
gccgccaaggaagacgaagacgaaaaacccaaacgccgcacacgctcgcgcagccgcagc
aagtccaaggccgaagacaccgtgtccgatgacgcgacggtcagcaaagacgcggatgcg
accgacagcgaccagatcaacggcatgcagaccgtcgatctggacgatgaagaaggctcc
tctccgatggagcgggttgccgaaacgcctgtcgaagagccagacggcgatgatagcaag
gcagaaggtgacacgcccaaggccgccaatgcagatgcgaaagacgccgcgaaacctgat
gccgatgatcaggacgacagcgacgacgcggatgacagcgacgatagccccaaggctaaa
gatgcgtcctccaaggatgacagcatcgaatccgtggcggatgacgatgaccacgacgat
ctgcgcaccgcgcgcaagccacggcccaagcgctataaaatccaggaagtcgtcaaggtg
cgtcagatcctgctggtgcaggtcgttaaagaggaacgtggcaacaagggtgccgcgctg
acaacctatctgtcgctggccggccgctattgtgtgctcatgcccaacaccgcgcgtggg
ggcggcatcagccgcaagatcaccaacgccgcggaccgcaagaagctgaaagagatcgca
aacgaaattcaggtgccaaaaggtgccggtctgatcgtgcgcaccgccggtgcacaacgc
accaaggccgagatcaagcgcgactacgaatacctgcaacgcctgtgggaacagatccgc
gagctgacgctgaaatccatcgcgcccgccaagatctacgaagaaggcgacctgatcaaa
cgctcgatccgcgacctttataaccgcgagattgacgaggtgtttgtcgaaggtgaacgc
ggttaccgcatcgccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtg
aagctctatagcgaaacattgcccttgttcgcgcgctatcaggtcgaaagctacctctcg
ggcatgttcaatcccacggtgcagctgccttcgggcgggtatatcgtgatcggtgtgacc
gaagcgcttgttgcgatcgacgtgaactcgggccgggccaccaaggaaggctccatcgag
cagaccgcgaccaagactaacctggaagccgccgccgaagtcgcccgccagctgcgtctg
cgcgatctggccggtctgatcgtcatcgactttatcgacatggacgagcgtcgcaataac
gccgccgttgaaaagcttatgaaggaaaagctgaaaaccgaccgtgcgcgtattcaggtg
ggccgtatttccggctttggtctgatggaaatgtcgcgccagcgtttgcgtcccggtatg
atcgaggcgacgacacagccgtgccacgcctgccacggcaccggcctgatccggtcggac
gacaaccttgcgctgtcgatcctgcgccagatcgaggaagagggcacccgcaaacggtcg
cgcgaggtattgatcaccgcgcctgtgggcatcgctaacttcctgatgaaccagaagcgc
gaacatatcgcccatatcgaaggccgctatggcatggccgtgcgcatcgaaggcgacccc
gctttggtcagccccgatttctcgcttgaaaagttcaagaccgcgacacgggttgtcacg
ccgatcgaacatgtggtgtcggttgatacctccatcatggacgaggtcgacgatctggat
gttgatgcggaagcagatgcggacaatgctgacaatgaacctaccggcaacggcaatggc
gggcagaaccagcacaatggctctgacgatgacaatgatggcgaagggaaacccaagcgc
cgtcgtcgtcgccggaggcgtcggggtggcaaatccaacggggatgatgcggccaacggt
gaaaacaacggcgatagcaacaccaacggtgacaacggcgatagcgacgcgcccgcggaa
attgcggatgccaaggatgacgcgaaaacggatgcgactgcagacgccgcttctgatgac
gcgaaaccgcaggacaaacccaagcgcacccgtagccggacccgcaaacccaaggctgat
gccgcggcagaagcgaccgtagacgcggacgccaagacctccgaggacgcgaaacctgcg
gagacgacccctgccgacgcggaggccgccgaagacgcgcccaagccaaaacccaagcgg
acccgcacgcgcaagcccaaggccgcgcctgtcgaggctgtcgaagaggcgcccaagccc
gaggaaacacctgcgccaaaagagcagccaacccccgagcccaagcccgagcctgaggtg
acaccagacgcgccgacgcccgagcccgcaaaggagccgacgccgatcccgacgccggaa
cccacgcccgcgcagccgtcccagcccgccgaggtggagcaaacgccggccccgaccgag
gtgcccgatagcaccccgacggaaatgccgcccgcgcaggaaatccagccggagccaccg
gtcaccgaagtacctcagcccgaggcgaccccgcaggcggagcccgaaaaacccgccaag
cccaagcggcgcggctggtggtccttgggcggctaa
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