Sulfitobacter sp. CB2047: IV89_002553
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Entry
IV89_002553 CDS
T10375
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sulb Sulfitobacter sp. CB2047
Pathway
sulb03030
DNA replication
sulb03430
Mismatch repair
sulb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sulb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IV89_002553 (dnaE)
03430 Mismatch repair
IV89_002553 (dnaE)
03440 Homologous recombination
IV89_002553 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sulb03032
]
IV89_002553 (dnaE)
03400 DNA repair and recombination proteins [BR:
sulb03400
]
IV89_002553 (dnaE)
Enzymes [BR:
sulb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IV89_002553 (dnaE)
DNA replication proteins [BR:
sulb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IV89_002553 (dnaE)
DNA repair and recombination proteins [BR:
sulb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IV89_002553 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ULO19513
LinkDB
All DBs
Position
complement(2584894..2588427)
Genome browser
AA seq
1177 aa
AA seq
DB search
MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG
AGVQPIIGCQVDLAYVKVQPGEKPRDPAPVVLLAQSEAGYENLMKLNSCLYIDKGGALPQ
VTLEELEALNGGLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYVELQRHPG
EDGQPVAEQLTERGFVEMAYDMSIPLVATNDVYFPKADMYEAHDALICIADGAYVDQQQD
RRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFADDEIEELK
RQAHEGLKNRLKVIPHATTVEEYEKRLDFELGIIEGMGFPGYFLIVADFIKWAKDNNIPV
GPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPDFDIDFCMDRREEVIQYV
QRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA
DEPRLREEAKNEEVVARLLNYGQQIEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHLHVAADGTELFEPPEGLI
DDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWVPPCVNRSDATFKVVEGA
LVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVDLKRVGKRPLEMLARSGA
FDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFGEAGDDLPEPRIVPCDDWEAAER
LTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELTEKVSVKGAMNARLAGIVA
GRQERKSARGNRFAFAQLSDPTGAYEVTLFSDTLELARDHLETGSKVVVMVEATMESDQL
KLLGRSVVPIDTVVEDAGNMGLRIFVDDAGAIQAVADVLAGARSAARSAGKGPVQLCLMD
PTLPGEVEVDLCAEYPVTPKIKGAIRSLTGVMEVEEI
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagcaccccgattcattcacctgcgcacgcactccgaatattcgttgttggaa
ggggcgttgcggctgaaaaagctgcctgatctgtgcaagggggccgatatgccggcgctg
gccctgacggataccaacaacatgttcgccgcgttggaattctcggtcgccatggcgggg
gccggtgtgcagccgatcatcggctgtcaggtggatctggcctatgtgaaggtgcaaccg
ggggaaaagccgcgcgatccggcccctgtggttttgctggcccaatccgaggccgggtat
gaaaacctgatgaagctgaactcctgcctttatatcgacaagggcggggcgctaccgcag
gtcaccttggaggagctggaggcgctgaacggcgggttgatctgtctgacaggcggggcg
ggcggccccgtggggcagctattgcagggcggtcaacgccccgcggcagaggcattgatg
gcacggctgcacggggcttttgccgaccggctttacgtcgagttgcagcgccaccccggc
gaggatggccagcccgtagccgaacagctgaccgagcggggctttgtcgagatggcctat
gacatgagcatccccctggtcgcgacgaatgacgtctattttcccaaggccgatatgtac
gaggcccatgacgcgctgatctgtatcgcggacggggcctatgtcgatcagcagcaggac
cgtcgccgattgactgcgcagcactatttcaagtcgcaggccgagatggtgacgctgttt
gcggatttgccggaggcaatcgagaataccgtcgagattgccaagcggtgcgcgtttatg
gcgtatcggcgcgatccgatcctgccgaaatttgcggatgacgagatcgaagagctcaag
cggcaggcgcatgaggggctcaaaaaccggctcaaggtgatcccccatgccaccaccgtc
gaagaatatgaaaagcggctggatttcgagctgggcatcatcgagggcatggggttcccc
ggctattttctgatcgttgccgattttatcaaatgggcgaaagacaataatattcccgtc
gggccggggcggggctcgggagcgggtagtctggtggcctatgcgctgacgattaccgat
ctggacccgctgcgctatcaactgctgtttgaacggttcctgaaccccgaacgggtatcg
atgcccgactttgacatcgacttttgtatggatcgccgggaagaggtgatccagtatgtg
cagcgcaaatacgggcgcgacaaggtggggcagatcatcaccttcggggcgcttttgtcc
aaggcggcggtgcgtgacatcggacgggtgttgcagatgccttacgggcaggtggatcgc
ctgtccaagatgatccccgtcgagggcgtgaaacctgtcagcatcgaaaaggcactggcg
gatgaaccacgcctgcgcgaggaggccaagaacgaggaagtcgtcgcgcggctgttgaac
tatggccagcagatcgaggggctgttgcgcaacgcatcgacccacgcggcgggggttgtg
atcggggaccggccgctggacgcgctggtgccgctttatcaagacccgcggtccgatatg
cccgcgacgcagttcaacatgaaatgggtcgaacaggccggtctggtcaagttcgacttt
ctgggcctcaagaccctgaccgtcatccagaacgcggtcgaccagatcaaatcttcgggc
cgtcacctgcatgtggccgccgacgggacagagctgttcgagccgcccgaggggctgatc
gacgatatcgccaccatcccgctggacgacgaggcctcttacaagctttatgccagcgcc
aagacggtggcggtgttccaggtggaatccagcggcatgatggatgccctcaagcggatg
aagccgacctgtatcgaagacatcgtcgccttggtcgcgctgtaccggcccggcccgatg
gagaatattccggtctattgcgaggtcaagaacggccagcgcgagcgggaatccgtgcat
ccgtcgattgaccatatcctcgaggaaacgcagggcatcatcgtctaccaggaacaggtt
atgcagatcgcgcaggtcatggcgggctacagccttggtggcgctgacctgctgcgccgt
gcgatgggtaaaaagatcgccgaggaaatggccaaggaacgccccaagttcgaaaagggc
gcgatggccaacggggtcgacaagaaaaaggcgtctgaggttttcgaccttctggaaaaa
ttcgccaactacggtttcaacaaatcccacgccgccgcctatgcggtggtcagctatcag
accgcatggctcaaggcgaaccatccggtcgaattcatggccggcgtgatgaactgtgat
atccatctgaccgataagctggcggtctatttcgaagaggtccgcaaacggctggaactg
ccctgggtgccgccttgtgtgaaccgcagtgatgcgacgttcaaggtggtcgagggcgcg
ttggtctatgctttgggcgcgctgaaaaacgtcggggtggaagcgatgaagctgatcacc
gaaggccgcaaggttgacggtgtggacaagccctttgccacgctctttgatctggcgcgg
cgggttgatctgaaacgggtggggaaacgtccgcttgagatgctggcccgctccggtgcg
ttcgaccagctggacaacaaccgccgacgcgtctggcagtcgctggacgggttggtcagc
tattccgccgcgatccacgagcagaaagcctctaatcaggtgtcgctgtttggcgaggcg
ggggatgacttgccagagccgcgcatcgtgccttgcgacgattgggaggccgccgagcgc
ctgaccgaagagttcaaggccgtgggcttctatctgtcgggccacccgctggacgattac
atggggccgatgaaacgcaaatccgctacgggcggtgtgccgttcctgacgctggacgag
ctgaccgagaaagtctcggtcaaaggggcgatgaacgcccgtctggcagggatcgtcgcc
ggacggcaggaacgtaaatcagcgcgcggcaaccgctttgccttcgcgcaactgtcggac
cccacgggcgcttacgaggtgacgctgttctcggacacgctggaactggcgcgcgaccat
cttgaaacagggtcgaaggtcgtggtcatggtcgaggcgacgatggaaagcgaccagttg
aaactgctgggccggtcggtggtgccgatcgacacggtggtcgaggatgcgggcaatatg
gggctgcggatctttgtggatgatgcgggggctattcaggcggtcgccgatgtgctggcc
ggtgcccgatccgcggcgcgcagcgcgggtaaggggccggtacaactgtgcctgatggac
ccgaccctgcccggcgaggtggaggttgacctctgcgccgaataccctgtcacccccaag
atcaagggtgccatccggtccctgaccggcgtgatggaggtagaggaaatctga
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