Sulfitobacter sp. CB2047: IV89_003069
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Entry
IV89_003069 CDS
T10375
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sulb Sulfitobacter sp. CB2047
Pathway
sulb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IV89_003069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulb03019
]
IV89_003069
03009 Ribosome biogenesis [BR:
sulb03009
]
IV89_003069
Enzymes [BR:
sulb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IV89_003069
Messenger RNA biogenesis [BR:
sulb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IV89_003069
Ribosome biogenesis [BR:
sulb03009
]
Prokaryotic type
rRNA helicases
IV89_003069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ThylakoidFormat
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ULO20000
LinkDB
All DBs
Position
3113317..3115512
Genome browser
AA seq
731 aa
AA seq
DB search
MIQTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDD
EKFGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAH
IVVATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFS
ATVPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKN
AIVFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAAR
GIDLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLK
VEWANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRA
RQSAPEQLAEPGTPADERPRGDFGPSVWFSISIGRNDDAEPRTILPMICRMGDLTKDDVG
AIRVQPSHTFVEILATSADKFTNALGPDMKVEDGAVVTKLDKAPDLSRGPKPGGRGPKPN
RGGPRSDNGPRPDRGPRPDRAPYDPDAPRAPRKPRAASTEEASVTYDKPRGPRPDKGFDK
PRGDKPKFDKPKAPKGERPPKSHKTERSPMKPGATPKPKSAGKPDSFDKPGGKPKAKAVW
KKEKPADRGADRPRGDGKPADKPFKARAADPSKRFVPPGKLGAKPKGGKPSGKAGGGDAA
PKRGKSSFRPK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
ttgatccaaaccatcgcagacgcgcttgccacccaaggctatgattcgcttacccccgtc
caagaggcggttaccaacccagatctggtcgaggccgaccttctggtgtcagcccaaacg
gggtccggcaagacagtggcctttggtctggccatcgcaccgacccttttgggcgacgat
gaaaaattcggacacgctggcgcgcccctggcgctgatcatcgcaccgacgcgcgaattg
gccatgcaggtcagccgcgagctgacgtggctttatggcaaggccggtgcggtcgtgacc
acctgcgttggcggcatggacacacgcaccgaacgtcgtgcgctggaccgtggcgcgcat
atcgtcgtcgcgacaccgggccgcctgtgcgaccacatcaaacgcaacaacatcaacctg
tccgacattcgtgccgtggtgctggatgaagcggacgagatgcttgatctgggtttccgc
gaagagctggaattcatcctctccgaagcgccggaagagcgccgcacactgttgttctcg
gccaccgtgcctgcggcgatcgccaagctggccaaatcctaccagcgtgatgcgcagcgc
gtcgaaaccgtgggcgaaaagaaacaacacgccgacatcgaataccgtgcgctgaacgtg
cacccgcgcgacactgaaaacgcgatcatcaacgtgctgcgcttttacgaggcgaaaaac
gccatcgtcttctgcaacacccgcgccgccgtcgcacgcctgaccacccgcttcaccaac
cgaggcttttcagtcgtggcgctgtcgggcgagctcacgcaatccgaacgcaccaacgcg
ctgcaagcgctgcgcgacgggcgcgcgcgcgtctgtatcgcgacagatgttgccgcacgc
gggatcgacctgcccaacctcgaactggtggtgcatgccgatctgccgtcgaactctgac
acgttgctgcaccgctcggggcgtaccggtcgtgccggtcgcaagggtgtgtctgcgctg
atcgttcccgccaagatgcgcagcaaggcaaaccgtctgctgggcggtgccaagctgaag
gtcgaatgggccaacccgccctctgctgaagaagtgaacgccgaagacgaaaagcgtttg
ctggctgattccgcatggtctgacccgatccccgatgatgcagcgggctttgttgccaat
ctggtcgaacagttcagcgccgagcaactggcgacggcctttgtgaacctgtaccgtgca
cgccagtccgcgcccgagcagctggcagagcccggcacccctgccgacgaacgcccccgt
ggcgactttggcccgtcggtctggttctcgatctcgatcgggcgcaatgatgacgccgaa
ccccgcaccatcctgccgatgatctgtcgcatgggcgatctgactaaggatgacgtgggc
gcgatccgcgtgcagcccagccatacctttgtcgagatcctcgcgacctcggcagataaa
ttcaccaacgcgcttggccccgacatgaaggtcgaagacggcgcggttgtgaccaaactg
gacaaggcccccgatctgtcgcgcgggcccaagcccggcggccgtggccccaaaccgaac
cgtggcggcccccgttctgacaatggcccgcgtcccgatcgtggcccacgccccgaccgc
gcaccctatgaccccgacgcaccacgtgcaccgcgcaaaccacgtgcggccagcaccgaa
gaagcatcggttacctacgacaaacctcgcggcccgcgccccgataaagggttcgacaaa
ccgcgcggcgacaagccgaagtttgacaagcccaaagcccccaaaggcgaacgcccgccc
aagtcgcacaagaccgaacggtctccgatgaagcccggtgccacgcctaaacccaaatct
gccggcaagcctgacagctttgacaaacccggcggcaagcccaaagccaaagccgtctgg
aaaaaggaaaagccagcggatcgtggggcggaccgcccccgtggcgacggcaaaccagcg
gataaaccgttcaaggcccgcgccgctgacccgtcgaagcgctttgtcccaccgggtaaa
ctgggcgcgaaacccaagggcggcaaaccctcgggcaaagccggtggcggcgatgcagcc
cccaaacgcggcaagtcgagctttcgcccgaaataa
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