Sulfurimonas sp. CVO: CVO_07980
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Entry
CVO_07980 CDS
T06373
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sulc
Sulfurimonas sp. CVO
Pathway
sulc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sulc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVO_07980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sulc03021
]
CVO_07980 (rpoC)
03400 DNA repair and recombination proteins [BR:
sulc03400
]
CVO_07980 (rpoC)
Enzymes [BR:
sulc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVO_07980 (rpoC)
Transcription machinery [BR:
sulc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVO_07980 (rpoC)
DNA repair and recombination proteins [BR:
sulc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVO_07980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YqfD
Motif
Other DBs
NCBI-ProteinID:
QHG91766
LinkDB
All DBs
Position
complement(1594716..1599236)
Genome browser
AA seq
1506 aa
AA seq
DB search
MSKLVAIEVTEEKRPTDIKQIQFRLASPEKVLSWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRVRMGHIDLVTPVAHIWYVSS
LPSRIGTLLGIKMKDLERVLYYEAYIVEEGGEAYYDAEAKTPVLKYDVLNEEQYRTLVSR
FGELGFKARMGGEVVRDLLDSIDLVDAFTQLKEEIELTKSEAKRKTIAKRLKVIESFLNS
GNNPAWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLVELEAPEI
IVRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPSLSMDQCGLPKKMALELFKPHLIAKLEDKGYATTVKAAKKMIEDKTNEVWE
CLAEIVDGYPIMLNRAPTLHKLSIQAFHPKLIDGKAIQLHPLVCAAFNADFDGDQMAVHI
PLSSAAIAEAKVLMMASMNILLPASGKAIATPSQDMVLGIYYITLEKNGVKGSNKLFANV
DEVRIAIEHDALDIHAKVRTRDNGRIIHTTAGRMLLKAILPDFVPSELWNRVMKKKAINE
LVDYVQKHGGIGVTAGFLDRLKDLGFKHATESGVSISIDDIKIPETKAAKIADSKNRVFE
IQKQYEAGLLTEQERYNKIIDVWTDTNNTLATQMMELVQTDKKGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLNVIEYFISTHGARKGLADTALKTANAG
YLTRKLVDVAQNVKIVEHDCHTHEGIEISDISDQNTLIESLEDRLNGRVLADDIIDPISN
EILYAEGTLIDEVSAKVIAEAGIKTAYIRTPTTCKSENGICALCYGVNLATGKIVRKGEA
VGIIAAQSIGEPGTQLTLRTFHVGGTASSTAQERQVIAEKEGFIRYYNLKTYASKEGKNI
VANRRNAAVLLVEPKIKAPFAGKIEIQTIHDEVIISVTSKTETVRYSIRKNEIAKPNELA
GIGGHIEGKYYFPYEDGSEVKELESIVETIKDGWNVPSRIPYASEVLVPNGAPVTQKIFA
KEEGVVKYFLLRGDYLERFEGLKPGYEVVEKGLFATVVDSNNREAVRHYIARGSVIVADD
DAVVDAKSVIAKPKTDESTVIAEWDPYSNPIISETNGVVHFEDIIIGTTATEQYDELTGK
TRLMINDHIPAEYKPTIVLASEDGELLRYQLQIKTSIYVKNGATVKVADIIAKTPKALQK
SSDITGGLPRVSELFEGRRPKATALISEIDGIVSFGKPLRGKIRIIVASESGIIKEYFVD
KSHSAVVNAGDFVHAGERLTSGIISSHELLRIMGVKALYNYLVSEVQQVYRSQGVNIADK
HIEVIFTQMLRQIKIVKSGDTKFIEGDLISKAKFAQENEKIIKLGGRPAIAEPFLVGITR
ASVSADSIISAASFQDTTKVLTEAAVSAKIDDLNDLKENVIIGRTIPVGTGIYKDQEVVF
NSDEEK
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattagtagctattgaagtgactgaagagaaaagaccgactgatataaaacag
atacagtttcgtttagcttctcctgaaaaggtgttatcttggagtcatggtgaagtaaaa
aaacctgaaactatcaactaccgtacacttaaacctgaacgcgacggtctattttgtgct
aagatttttggtcctgtaagggattatgagtgtctttgcggtaaatacaaaaaaatgcgc
tataaaggtgttgtttgtgagaagtgtggtgttgaagtaacaagcagtaaagtccgccgt
gttcgtatgggtcatattgatcttgtaactccggttgcgcacatctggtatgttagttca
ctaccttctcgtattggtactcttttaggtatcaagatgaaagatttagagcgtgtacta
tactatgaggcatatattgtagaagagggtggcgaagcatattatgatgctgaagcaaaa
actcctgttttaaaatatgatgttttaaatgaagagcagtaccgtactttagtgtctaga
tttggtgaactaggttttaaagctcgtatgggtggcgaagttgttcgtgatttgttagat
tcaatcgatttagttgatgcatttacgcagcttaaagaagagattgagcttacaaaaagt
gaagctaaaagaaaaactattgcaaaaagacttaaggtaatagaatctttcttaaactct
ggaaataaccctgcatggatgatgttgacagtactgcctgttcttccacctgatctaaga
cctttggttgcattagatggcggaaaatttgcagtttctgatgttaatgacctttatcgt
cgtgtaattaaccgtaatcaaagacttaagcgtcttgtagagcttgaagcacctgaaatc
atcgtaagaaatgaaaaaagaatgcttcaagagtctgttgatgcactttttgataatggt
cgtcgtgcaaatgctgtaaagggtgctaacaagcgtccacttaaatctttaagtgaaatt
attaaaggtaagcagggtcgttttagacaaaatttgcttggtaagcgtgttgacttttct
ggccgttctgtaattgttgttggtccatctttatcaatggatcaatgcggattgcctaag
aagatggcactagagctctttaaaccacatttgattgcaaagctagaagataaagggtat
gcgactactgttaaagctgctaagaaaatgattgaggacaaaacaaacgaagtttgggag
tgtcttgctgaaatcgttgatggttatcctattatgcttaaccgtgcaccgacacttcat
aagctctcaattcaagcgttccatcctaaattgattgatggtaaagctattcagcttcat
ccgttggtttgtgctgcatttaatgccgactttgacggtgaccagatggctgtgcatatt
cctttaagttcagctgctattgcagaagcaaaagttcttatgatggcatctatgaatatt
cttctgccagcatcaggtaaggcgatagctactccgtcacaggatatggttcttggtatt
tactatattactttggaaaaaaatggagtaaaagggtcaaataaactttttgcaaatgtt
gatgaagtaagaatcgctattgaacatgatgctcttgatatccatgcaaaagtaagaaca
agagacaacggaagaattattcatacaactgcagggcgtatgcttctaaaagctatttta
cctgattttgttccatcagaactttggaacagagttatgaagaaaaaagctatcaacgaa
cttgtagattatgttcaaaaacatggtggtattggagtaacggcaggtttcttggataga
cttaaagatttaggttttaaacatgcaactgagtctggagtatctatctctattgatgat
attaaaattccagaaacaaaagcagctaaaattgctgattcaaaaaatagagtatttgag
attcaaaaacagtatgaagctggtcttttaactgagcaagagagatacaataaaatcatc
gatgtttggacagatacaaacaatactttggcaactcagatgatggagcttgttcaaact
gataaaaaaggttttaactctatctatatgatggcagattccggtgctcgtggttcggct
gctcaaattcgtcagcttgccggtatgcgtggtcttatggctaagccaagcggtgaaatc
atcgaaaccccgattatctctaactttaaagagggtcttaatgtaatcgagtactttatc
tctacgcacggtgctagaaaaggtcttgccgatactgctcttaaaacagcaaatgcggga
tatttgactcgtaagcttgtagatgttgcacaaaatgtaaaaattgtagagcatgactgt
catacacatgagggtattgagatctctgatatcagtgatcaaaatacattgattgaatct
cttgaagacagactaaacggtagagttttagctgatgatatcattgatcctatcagtaat
gagattctttatgctgagggaactttgattgatgaagtaagtgcaaaagttatagcagaa
gccggcattaaaacagcatatataagaacacctactacatgtaaaagtgaaaatggaatt
tgtgctctatgttatggggtaaacttggctactggcaagatagttcgtaaaggtgaagct
gttggtattattgccgctcagtcaatcggtgagcctggtactcagcttactcttagaaca
ttccatgtgggtggtacagcgagttcaactgctcaagagagacaagttatagcagaaaaa
gaaggttttatccgttactataatttgaaaacatatgcttctaaagagggtaaaaatata
gttgcaaaccgtagaaatgctgccgtacttttagttgaacctaaaattaaagcgccattt
gcaggtaaaattgagattcaaacaattcatgatgaagtaataattagtgttacttcaaaa
acagaaacagttcgttactctattcgtaaaaatgaaattgccaaaccaaatgaattagcg
ggaatcggtggacatatcgagggtaaatattacttcccttatgaagatggttcagaagtt
aaagagttagagtctatcgttgaaactattaaagatggctggaatgtaccaagccgtata
ccgtatgcgtctgaagttttagttccaaacggtgctccggtaacgcaaaagattttcgca
aaagaagaaggagtagttaaatacttcttgttaagaggcgactatctggagagatttgaa
ggtcttaaacctggttatgaagtagtagagaaaggtctttttgctactgtcgtagattca
aataaccgtgaagctgtaagacactatattgctcgcggttcggtaattgttgcggatgat
gatgctgtagtagatgctaaatctgttatagcaaaaccaaaaactgatgaatcaactgta
attgcagagtgggatccatactctaatccgataatatctgaaacaaacggtgtagtccat
tttgaagatattattattggaactactgcgactgaacagtatgatgagctgactgggaaa
actcgtttaatgattaacgatcatattcctgctgaatataagcctacaattgtgcttgct
agtgaagatggtgaacttttaagatatcagcttcaaataaaaacatctatttatgttaaa
aacggtgcaacggttaaagtagcggatattattgctaaaactccaaaagcgcttcaaaaa
tcaagcgatattacaggaggtcttcctcgtgtaagtgaactttttgaaggtcgtcgtcca
aaagcaacagcacttatctctgaaatagacggtattgtaagttttggtaaacctcttcgc
ggtaaaattagaattattgttgcgtctgagagcggcataataaaagagtattttgtagat
aaatctcactcagccgttgtaaatgcaggagattttgtgcatgccggtgaaagattgaca
tcgggaataatctcttcgcatgaattattgcgcattatgggcgtaaaagcactttacaac
tatcttgtaagtgaagtacagcaggtttatcgttcacaaggggttaatattgctgataaa
catattgaagtaatttttactcagatgttaagacagatcaaaattgtaaaatctggtgat
acgaaatttattgaaggagatctgatctctaaagcaaaatttgcacaagagaatgaaaaa
attatcaaacttggcggtcgtcctgcaatcgctgagccattccttgtaggtattacaaga
gcttcagtttcagctgacagtattatctctgctgcatcattccaagatactactaaagta
ttaaccgaagctgcggtaagcgcaaaaatagatgatctaaatgatcttaaagaaaatgtt
attattggtcgtactattcctgtaggaacaggtatttataaagatcaagaggtagttttt
aacagcgatgaagaaaaatag
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