Sulfolobus sp. E5-1-F: GFS03_07905
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Entry
GFS03_07905 CDS
T06918
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
sule
Sulfolobus sp. E5-1-F
Pathway
sule03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sule00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFS03_07905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sule03019
]
GFS03_07905
Messenger RNA biogenesis [BR:
sule03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GFS03_07905
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
GFS03_07905
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
QGA54497
UniProt:
A0A5Q0SPA4
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All DBs
Position
1577616..1578443
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AA seq
275 aa
AA seq
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MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTRLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYRVEQDSNGF
RVNKNEITGKLPLNYPVVTVSIAKVDKYLIVDPDLDEESIMDAKISFSYTPDLRIVGIQK
SGKGSMSLQDIDQAENTARLAAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttctactccatcaaatcaaaatattatacctataattaagaaggaaagtatagta
agtctttttgagaaaggtattaggcaagatggaagaaaattaacggattatagacctctt
tcaataaccttggattacgcaaagaaggctgatggttctgcgttagtaaagttaggcaca
acaatggtattggctgggacaaaacttgaaatagataagccttatgaagacactcctaat
caaggaaacctcattgtcaatgttgaactcttacctttagcgtatgaaacctttgaacct
ggacctccggatgagaatgctattgaattagctagagtagtagatagaagtttaagggat
tctaaagcattagatctaactaggcttgtaatagaacctggtaaaagtgtatggacagta
tggcttgatgtttacgtattagactatggcgggaatgtattggacgcatgtacgttggcc
tcagttgcagcattatataatactaaagtgtatagggtggagcaagattctaacggattt
agagtcaataaaaatgaaattactggtaaattaccattgaattatccagtagttacagta
tctatagcaaaagttgataaatatttaatagttgatccagatttggatgaagagtcaata
atggacgctaagatttcattttcttacactccagatctaagaatagtggggattcaaaag
agtggaaagggcagtatgtcattacaagatattgatcaagctgagaatacagcaagatta
gcggctgttaagcttttagaagaacttaaaaagcagttaggaatttaa
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