Sulfuriferula sp. AH1: CAP31_06390
Help
Entry
CAP31_06390 CDS
T04857
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sulf
Sulfuriferula sp. AH1
Pathway
sulf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAP31_06390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulf03019
]
CAP31_06390
03009 Ribosome biogenesis [BR:
sulf03009
]
CAP31_06390
Enzymes [BR:
sulf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CAP31_06390
Messenger RNA biogenesis [BR:
sulf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAP31_06390
Ribosome biogenesis [BR:
sulf03009
]
Prokaryotic type
rRNA processing factors
CAP31_06390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ARU31345
LinkDB
All DBs
Position
complement(1253248..1256127)
Genome browser
AA seq
959 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIESANKEQRKSNIYKGIVTRVEPSLEAAFIDY
GSDRHGFLPFKELSRACYSVDAPESGRPRIQDVLREGQELIVQVEKDERGNKGAALTTYI
SLAGRYLVLMPNNPRGGGVSRRIEGEERNELRDVMAQLVIPAGMSIIARTAGIGRGVEEL
QWDLNYLLQLWNAIDGAANSQKGAFLIYQESSLVIRAIRDYFQPDIGEILIDTEEVYEQA
QQFMSHVMPGNVHKVKLYKDDVPLFSRFQIEHQIETAFSREVSLPSGGAIVIDHTEALVS
VDVNSARSTRGTDIEQTAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMESQKNQRDVEN
RLRDALHYDRARVQFGKISKFGLMELSRQRLQPSLGESSHQPCPRCNGTGFIRGIESTAL
HILRIIQEQAMKDQTGAIHAQIPVDVATFLLNEKRADIFAIESRLKVSVVLIPNIHLVTP
HYKITRLRHDEINPLEMLTPSYRLSETIEEATPAETRKENKPAAQVPVVRGITPTQPAPI
IAEKAAEITSAISTSAKSGLIGRIFGWLQKFGEDKPAAVTPAVEPVAPTVREHRPQQDTR
NRNRSRNERPPRNEIRNEAKGETATERPARTERPPRPERAPRQDRGPQEVGIEMNSDKQA
KPESGKKPRPPRQPRHAIDNNVNETAAAEATLTNDDAATGVATAPQEPRSRRGRRGGRRE
RRPEHANNQAETATADTANQLPSTAKNEIAPDVVAPAIATEAEAATSAPAEIKSDAIAVS
EPVVAEPVVEVHEAATEIQQIEPIAAPVEIIAAPAAVVSPTSPSVAATQMDIFAPATTDT
SSTVTAAPIAASGKPAIEQLLAELLAPSTEAANLQMIETQAASKEQQSAPTATPKARAAR
AKPVVTEAESAPLLQVETTAAPVVNAEIGTNKPRRERKSLQQNTQNVAEVQLTQVETKH
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgcgacacaagcagaagaactccgtgtcgccattgtcgat
ggccaaaaactggtcgatctggacattgaatctgcaaacaaggaacaacgcaaaagcaat
atatacaaaggtatcgtcactcgtgtcgagcccagtctggaagccgcttttatcgattat
ggcagcgaccggcatggctttttgcctttcaaggaattatctcgcgcatgctattcggtt
gatgcaccggaatccggccgcccgcgcatacaagacgtcttgcgcgaagggcaggagctc
atcgttcaggtagaaaaagacgagcgcggcaacaagggcgcggccctcaccacctacatc
agcctagccggtcgatatctggtattaatgccgaacaatccgcgcggcggcggcgtttcc
cgtcgtattgaaggcgaggaacgtaacgaactgcgcgatgtaatggcccaactcgtcata
cccgccgggatgagtattattgcccgtaccgccggtatcggacgcggagtagaagaattg
cagtgggatttgaactacttgctgcaattatggaacgctattgacggcgcggcaaatagc
caaaaaggtgcatttctgatttatcaggaaagcagcctggtgatacgcgccattcgcgac
tacttccagcctgacattggcgaaatcctgattgataccgaagaggtctacgagcaggcg
cagcagttcatgagccatgtgatgcccggcaatgtgcacaaagtcaaattgtacaaagac
gatgtgcccttgttctcccgcttccaaatcgaacatcagattgaaaccgctttttcccgc
gaagtgagtctgccttccggcggcgcaatcgtgatcgaccacaccgaagccctggtttcg
gtcgacgtcaactcggcacgctccacccgcggtaccgatatcgagcagacagcattcaac
accaatctggaagcagcggaagaagtcgctcgccagttgcgcttgcgcgatctgggcgga
ctggtcgttatcgatttcatcgacatggaaagccaaaaaaatcaacgtgatgtggaaaat
cgtttacgcgatgcattacattacgatcgcgctcgcgtccagtttggcaaaatatcgaaa
ttcggcctgatggagctatcgcgtcaacgcttgcagccttctctcggcgaatccagtcac
caaccctgcccccgctgcaatggcaccggtttcatacgcggtatcgaatcaaccgcattg
catatcctgcgcatcattcaggagcaagcgatgaaagatcagacgggtgcgatccatgcc
cagattccggttgatgttgctaccttcctgttaaatgaaaaacgtgctgatatttttgcc
atcgagtcacggctcaaggtcagtgtcgtgctcattcccaacattcatttagtgacgccg
cattacaagattacccgcctgcgtcacgatgaaatcaatccgctggaaatgcttactcca
agttatcgattaagcgaaactatcgaagaggcgaccccggcagaaacccggaaagagaat
aagccggcagcgcaagttcctgtggtccgcggcattactccaacccaaccggcaccgatt
attgctgaaaaggcagctgaaatcacttcagccataagcacttctgccaaatccggcttg
attgggcggatttttggctggctgcaaaaatttggcgaagataaacctgccgccgttacg
cctgcagttgaaccagttgcgccgaccgtacgggagcatcgcccacaacaagatacacgc
aaccgcaatcgctcacgcaatgagcgtccgccacgcaatgaaatacgtaacgaagcgaaa
ggcgaaacggcaaccgaacgtcctgcccgcactgaacgcccgcctcgtccggagcgtgca
ccgcgtcaggatcgcggcccgcaagaagtcggcattgaaatgaattcggacaaacaagcc
aaacctgaatccggcaaaaagccacgcccaccacgccaaccgcgccatgccattgacaat
aacgtgaatgagaccgcagcagcggaagccacgctgacaaatgacgatgccgccaccggc
gttgcgactgcaccgcaagaaccccgcagtcgccgtggacgtcgcgggggccgtcgcgag
cgccgtcctgagcatgcaaacaaccaagccgagaccgcgactgcagatacagccaaccag
ctgccttcgactgctaaaaacgaaattgcgcctgacgtagttgcgcctgcaatcgctacg
gaagcggaagcagcaacttctgctccggctgaaatcaagagcgatgcaattgccgtatct
gaaccggttgttgctgaaccggttgttgaagttcatgaagcggcaaccgagattcagcag
attgaaccgatcgcagctcccgttgagatcattgctgctccagccgccgttgtcagcccg
acaagcccgtctgtagcagcaacgcaaatggacatattcgcaccggctactacagacact
agcagtaccgtcacagctgctccaattgcggcatcgggaaaaccagccattgagcaatta
ctggccgagctgctggcgccttctaccgaagccgcgaatttacaaatgatcgagacgcaa
gcagcaagcaaggaacagcaaagcgctccgacagccacccccaaggccagagcggctcga
gccaaaccggttgtcacagaggcagagagcgcaccgttgttgcaagtcgagaccacagca
gcacctgtcgtcaatgccgagatcggaacgaacaaacctcgccgcgaacgtaaatcattg
caacagaacacgcagaatgtggctgaagtccagctcacccaggtcgagaccaaacactaa
DBGET
integrated database retrieval system
