Sulfuriferula sp. AH1: CAP31_08545
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Entry
CAP31_08545 CDS
T04857
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sulf
Sulfuriferula sp. AH1
Pathway
sulf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAP31_08545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulf03019
]
CAP31_08545
03016 Transfer RNA biogenesis [BR:
sulf03016
]
CAP31_08545
Enzymes [BR:
sulf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CAP31_08545
Messenger RNA biogenesis [BR:
sulf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAP31_08545
Transfer RNA biogenesis [BR:
sulf03016
]
Prokaryotic type
tRNA degradation factors
CAP31_08545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ARU31725
LinkDB
All DBs
Position
1676515..1678857
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AA seq
780 aa
AA seq
DB search
MKTITPTKKPRKSKALRWSDPHLERERERYENPLPSREFIMDVLRQHGAPLLGEELGSLL
GITAEEADLFARRLRAMERDGELIQNRRGDLCVVEKLDLIKGRVEGHPDGFGFLKPEDGS
DDLFLSPRELQKALHGDRVMAREVGVDRRGRREAKIVEVLERANTRIVGRLIIEHGIMLV
TPENKRITQDILIPAGSEGNAKAGEVVNVELVEQPAKYNKPVGRIVEVLGSYADPGMEIE
IALRKHSLPYIFPDTVETLAKKLPKKVLKKDHEGREDIRHLPLVTIDGETARDFDDAVYC
EPQGKDFRLIVAIADVSHYVQPGDALDLEAYNRGNSVYFPRRVIPMLPEALSNGLCSLNP
QVERLCMVCDMQIGVMGAVKSYRFYRAVMYSHARLTYNQVWEWLQKPANAGEHSHLLPEL
NQLYTLYKVLLKARERRGAIDFETIETQMVFNNDKKIERIVPVTRNDAHRIIEECMLSAN
VCASDFLKKQKHPTLYRIHEGPTPEKLTALREFLSEFGLGLTGGDDPQAKDYAKLLQQIK
NRPDAQLLQTVMLRSLQQAVYSPDNVGHFGLAYEHYTHFTSPIRRYPDLLVHRSIKAALN
GEKYVPGNWVELGGHSSMTERRADDATRDVEAWLKCYYMQDRVGEEFVGTIASVTGFGLF
VALDDIYVEGLVHISELGSDYFHFDKTRHQILGERTGVRYRLGDRVHVKIVRVSLDTTRI
DFSLTTVDNSARKTAVKSAQKPAAKAGAKSAKKSTQGKRAAVQSTPSADAPAKKSRRRRK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactattacacctacaaaaaaaccacgtaaaagcaaagcccttcgctggagcgat
ccgcacctggaacgggagcgcgaacgttatgagaacccgctgcccagccgcgaattcatc
atggatgtattgcgccagcatggcgcgccattactcggcgaagaattaggcagcttgctg
ggcatcactgccgaagaagccgatctgttcgcgcgccgcttgcgcgccatggaacgcgac
ggcgagctgatccagaaccggcgcggcgatctgtgcgtcgtagagaaactcgacctgatc
aaaggccgcgttgaaggccacccggacgggttcggtttcctcaagccggaagacggcagc
gatgatttgttcctgtcgccacgcgaattgcaaaaagcattgcatggcgaccgcgtcatg
gcacgcgaagtcggcgtcgaccggcgcggccggcgcgaagccaaaatcgtcgaggtactg
gaacgcgccaatacgcgtatcgtcggccggctgattatcgaacacggcatcatgctggtc
acacccgagaacaaacgcatcacccaggacatcctgattccggcaggcagcgagggcaac
gccaaagccggtgaagtcgtcaatgtggagctggtcgaacaacccgccaaatacaataaa
ccggttggccgcatcgttgaggtactcggcagctacgccgacccgggcatggaaatcgag
atcgcgctgcgcaaacactcattgccgtatatcttccccgataccgtggaaaccctggca
aagaaactgccgaaaaaggtgttgaaaaaggaccatgaaggacgtgaagatattcgccat
ctgccattggtcaccatcgacggcgaaaccgcacgcgacttcgacgatgccgtttactgc
gagccgcaaggcaaggatttccgcctcatagtcgcgattgccgacgtttcccattatgtc
cagcccggcgatgccctcgacctggaagcttacaatcgcggcaattcggtatatttcccg
cgccgcgtgataccgatgctgccggaagccttatccaatggcttgtgctcgctcaatccg
caggtcgaacgcctgtgcatggtatgcgacatgcaaatcggtgtcatgggcgcagtgaaa
agttaccggttttaccgcgcagtgatgtattcacacgcccgtcttacctacaaccaggtc
tgggaatggctgcaaaaacctgccaacgccggtgagcacagccatttactgcccgaacta
aaccagctctataccctgtacaaggttctgctcaaggcccgtgaacgccgcggcgcgatc
gacttcgaaaccatagaaacgcagatggtgttcaataacgacaaaaaaatagagcgtatc
gtcccggtcacccgcaatgacgcacaccgcatcatcgaagaatgcatgctatcggccaac
gtctgcgcatcggatttcctgaaaaaacagaaacatccgaccctgtaccgcatccatgaa
ggccctactccggagaaactcacagcgctacgtgaatttctgtcggaattcggcctgggc
ctgaccggtggcgatgacccgcaagccaaggactacgccaagctgttgcaacagatcaaa
aacagacctgacgcccagttactgcagacagtgatgctgcgttcattgcaacaagccgtt
tacagcccggataatgtcggccacttcggcctggcgtatgagcactacacccacttcacc
tcgccgattcgccgctatcccgatttattggtacaccgctccatcaaagccgcgctcaac
ggcgaaaaatacgtacccggcaactgggtggagctgggcggccacagttcgatgaccgaa
cgccgcgccgatgacgccacacgcgatgtcgaagcgtggctaaaatgctattacatgcag
gaccgcgtcggcgaagaattcgtcggcaccattgccagcgtcaccggattcggcctgttc
gtcgcgctggatgatatttacgtggaaggtctggtgcatatttccgagctcggtagcgat
tatttccatttcgacaaaacccgtcaccagattctcggcgaacgcaccggggtgcgctat
cgcctcggtgaccgcgtccatgtcaagatcgtacgcgtcagtctggacaccacgcggatc
gatttcagcctgactaccgtcgacaacagcgcacgcaaaacagcagtcaaatcggcgcag
aaaccagcggcaaaagcaggcgccaaatcagcgaaaaaatccacgcaaggcaaacgtgct
gccgtacaatccacgccttccgccgatgcgcccgcaaaaaaatcgcgccggcgccgcaaa
taa
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