Sulfuriferula sp. AH1: CAP31_10060
Help
Entry
CAP31_10060 CDS
T04857
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sulf
Sulfuriferula sp. AH1
Brite
KEGG Orthology (KO) [BR:
sulf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sulf03016
]
CAP31_10060
Enzymes [BR:
sulf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CAP31_10060
Transfer RNA biogenesis [BR:
sulf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CAP31_10060
Prokaryotic type
tRNA splicing ligases
CAP31_10060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ARU31991
UniProt:
A0A1Y0G884
LinkDB
All DBs
Position
complement(1985513..1986946)
Genome browser
AA seq
477 aa
AA seq
DB search
MNLQGLNEISPYCWRIPENAAEHRAPVLLYGSEPLLASMDEKVREQISNVARLPGLVGAA
MTMPDAHWGYGFPIGGVAAFDAEQGGIISAGGVGFDISCGIRALRTNLTLGDLVPQAERL
ANALFQAIPAGVGEEGSLRLSPSQLDAVMLGGAEWAIQHGYGKREDLAYIEENGCIGGAV
PENVSDFAKKRQRGEMGTLGSGNHYLEVQIVDRIYDAEAAQAFGLSEGQVLVSIHCGSRG
LGHQIGTEYLLSLAKAAGRLGITLPDRELACAPINSPEGQAYLGAMNAAINVALANRQIL
THLTREVFGEVFPHSALETLFDVSHNTCKLEKHVYEGRERWLYIHRKGATRAFGPHHPSL
PARYQEAGQPVIIGGSMGTGSYVLAGTRESENKAWSSASHGAGRAMSRNAALKFWRGREL
IDELALRGILIRTKSMRGAAEEAPGAYKDVGKVAEATEKAGLAKRVAFLRPKVCIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcagggcctgaatgaaatttcgccctattgctggcgtattccggaaaatgcc
gcagaacaccgtgctccggtgctgctgtacggcagcgagccgctgctggcgagcatggat
gagaaggtgcgcgaacagatcagcaatgtcgcccggctgcccgggctggtcggcgctgcg
atgaccatgccggacgcgcactggggttacggtttccccatcggcggagtagccgccttt
gatgcggagcagggtggcatcatctctgccggcggggtcggcttcgatatttcctgcggc
atccgcgcgctgcgcaccaatctgactctcggcgatctggtgccgcaagcagaacgcctc
gctaatgcgctgtttcaggctattccggccggggtgggggaggagggttcattgcggctt
agcccgtcccagctcgatgcagtcatgctcggcggcgcggaatgggccatccagcacggc
tacggcaaacgcgaagacctcgcctatatcgaagaaaacggctgtatcggcggagccgtg
ccggaaaacgtgtccgatttcgccaaaaaacgtcagcgcggcgaaatgggtaccctcggc
tccggcaatcattacctggaagtgcagatagtcgaccgcatttacgacgccgaagcggca
caggcctttggcttgagcgaaggccaggttctggtgtccatccactgcggttcgcgcggc
ctcggccaccagatcggtaccgaatatctgttgagtctggccaaagctgccggccgtctg
ggaattactctgcccgaccgcgagcttgcctgtgcgccaatcaactcacccgaaggccag
gcttatctgggcgcgatgaatgccgcgatcaacgtagcgttggccaaccgtcagatactc
acccacctcacccgcgaggtatttggcgaagtgttcccgcacagcgcgctggaaaccctg
ttcgatgtgtcgcacaacacctgcaagctggaaaaacatgtgtatgagggccgggaaaga
tggctctacatccaccgcaaaggcgcgacccgcgcgttcggccctcatcatccatccttg
ccggcgcggtaccaggaagccgggcagcccgtcatcatcggcggcagtatgggcaccggc
tcctacgtgctggcgggaacccgcgaaagtgaaaacaaagcctggtcatccgccagccac
ggtgccggcagggccatgagccgcaatgccgcgctcaagttctggcgcggcagggagctg
atcgatgaactggcgctccgcggcatcctgattcgtaccaagtccatgcgcggtgcggcc
gaggaagcgcccggcgcttacaaggacgtgggtaaggtggcagaagccacggaaaaagcc
ggcctcgccaaacgggtggcgtttttgcggcccaaggtctgcatcaagggttga
DBGET
integrated database retrieval system
