Sulfuriferula sp. AH1: CAP31_12185
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Entry
CAP31_12185 CDS
T04857
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sulf
Sulfuriferula sp. AH1
Pathway
sulf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sulf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAP31_12185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sulf03021
]
CAP31_12185
03400 DNA repair and recombination proteins [BR:
sulf03400
]
CAP31_12185
Enzymes [BR:
sulf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAP31_12185
Transcription machinery [BR:
sulf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAP31_12185
DNA repair and recombination proteins [BR:
sulf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAP31_12185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
UbiD
Motif
Other DBs
NCBI-ProteinID:
ARU32370
UniProt:
A0A1Y0G9J0
LinkDB
All DBs
Position
complement(2413348..2417421)
Genome browser
AA seq
1357 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRANILQVPFLLATQIDSFRAFLQEDVAPENRANEGLQAAFSSI
FPIASHSGNAKLDFVSYVLGEPAFDMVECQQRGLTYASPLRAKVRLTIMDREASKPTVKE
VKEQEVYMGEMPLMTPTGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDAKDYLYFRIDRRRKMPVSTLLKSLGYSNEQILSEFFTTDSFQLNEKV
IRFELVPDRMRGEIARFDIVDKTGAVIVPKDKRITVKHIRLMQESGLTQIAVPEDFLMGR
VLAKTVIDTATGEVIANANDEITETLLAKLVDAKVEQLNTLYVNDLDQGAYISATLRTDD
TPDQYAARVAIYRMMRPGEPPTEESVEALFAGLFFSEERYDLSAVGRMKFNRRIGRDELE
GSAVLSTEDIVSVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERAV
KERLSQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFAQTNKYGFLETPYRKVE
AGKVTDKIEYLSAIEESKYVIAQANAELDGEGRFTSEIVSCRFKNEFELASPERIEYMDV
APSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKSLVGTGIERTAAVDSGTT
VQARRGGVVDYVDAGRVVVRVNDDETKVGEVGVDIYTLIKYTRSNQNTNINQRPLVKVGD
RLARGDVIADGASTDMGELALGQNLLVAFMPWNGFNFEDSILISEKVVADDRYTSIHIEE
LTVVARDTKLGAEEITRDISNLSERMLGRLDDSGICYIGAEVEAGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGMAGTVIDVQVFTREGIERDARAKQIIEDQLAE
YKKDMADRMRIVENDTFARLQRLVLNKVAKGGPKKLAKDSVVTQDYLDSNNRHDWFDIRL
ADDESSRQMESLKDSLDQKRLEFDAMFEEKKKKLTAGDELQPGVQKMVKVYVAVKRRLQP
GDKMAGRHGNKGVVSKIVPIEDMPFTADGTPMDIVLNPLGVPSRMNVGQILETHLGWAAK
GLGKKIDEMLQAQKHVSEVREFLTKIYNSTGKQEDIASFSDDEVIELARNLRQGVPFATP
VFDGAAEEEIKSMLELAGLPRSGQITLFDGRTGEAFDRKVTVGYMHVLKLHHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQEMLTVKSDDVNGRTKVY
ENIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLERY
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagctattctttcaccgagaaaaaacgcatccgtaaaagttttgcaaaacgtgcaaac
attctccaggtgcctttcttgttggcaacacaaatcgattcgtttcgtgcttttttacag
gaagatgtcgcgcctgagaatcgtgcaaatgaaggtttgcaggcagcattttcgtcaata
tttcccattgccagccactctggtaatgccaagcttgatttcgttagctatgtgctggga
gaaccagcattcgacatggtggaatgtcagcaacgtggtctgacctatgcttcgcctttg
cgtgcaaaagttcgcttgacgattatggatcgtgaggcatccaagccgactgtgaaagaa
gtcaaagagcaggaagtgtatatgggtgagatgcccctgatgacacctaccggttcattt
attatcaatggcacggaacgtgttatcgtttcccaattgcatcgctcgcctggcgtcttt
tttgagcatgaccgcggtaaaacgcacagctccggaaaactgttgttctctgcccgtatc
attccttatcggggctcctggctggattttgaattcgatgcaaaagactacctctatttc
cgtatcgaccgtcgtcgaaaaatgccggtcagtaccctgctgaaatcgctgggttacagt
aatgagcagattctgtccgaattttttaccaccgattcgttccagctgaatgagaaagta
attcgtttcgaattggtgcctgatcgtatgcgtggcgagatcgcccgttttgatattgtc
gacaagacaggcgcagttattgtgccaaaagacaagcgcattactgtcaagcatattcgc
ctgatgcaggaatcggggttgacgcagattgctgtgccagaagattttctgatgggccga
gtattggcgaagactgtcatcgatactgctaccggcgaagtcattgccaatgcaaacgat
gaaataaccgaaacattgctggccaagctggtggatgccaaggttgagcagctcaatacg
ctgtatgtcaacgacctggatcagggtgcctacatatccgctaccttgcgcacggacgat
acgccggatcaatatgctgcacgcgttgcaatctatcgaatgatgcgtccgggcgagccg
cctacggaggaatcggttgaagcactgtttgctggcttgttcttcagtgaagagcgttac
gatttgtcggctgtgggccgcatgaaattcaatcgtcgtatcggacgcgatgagctggaa
ggttcggctgtactgtcgactgaggacattgtttccgttatcaagattctggttgagttg
cgtaacggccgcggcgagattgacgatatcgatcacctgggtaaccggcgtgttcgcagc
gtgggtgaattggccgagaatcaatttcgtgccggattggtgcgtgtcgagcgtgcggtc
aaggagcgtctgtcgcaagcggaatcagaaaatctgatgccgcacgatttgatcaatgcg
aaaccggtttcggcagcgatcaaggaattctttggttccagccagctgtcgcagtttatg
gatcagaccaatccattgtccgagatcacgcacaagcgtcgtgtatcggccttgggtcct
ggcggcttgacgcgcgaacgtgccggttttgaggtgcgtgacgtacatcctacccactat
ggacgggtttgcccgattgaaacaccggaaggtccgaacatcggtctgatcaactctctg
gccttgtttgcgcaaaccaataaatacggctttctggaaacgccataccgcaaagtggaa
gcgggcaaggttaccgacaagatcgaatacctgtcggcaatcgaagaaagcaaatatgtc
attgcacaggctaacgccgagctggatggcgaaggtcgtttcaccagcgagatcgtgtct
tgccgcttcaagaacgaattcgaactggccagcccggaacgcattgaatacatggacgtg
gcgccttcccagatcgtttcggtagcggcatcattaatcccgttcctggagcacgacgat
gcgaaccgcgcactgatgggttcgaatatgcaacgtcaggctgttccatgcttgcgcgct
gaaaaatcattggtaggtaccggtattgagcgtactgcggcagtggactcgggcactacc
gtgcaagcgcgtcgcggcggtgtggtggattatgtcgatgcaggccgtgtcgtggttcgc
gtcaatgacgatgaaaccaaggtaggtgaagttggcgttgacatctacacgctgattaaa
tatacgcgttccaaccagaacaccaatattaaccagcgtcccctggtaaaagtcggcgac
aggcttgcacgcggcgatgtgatcgctgacggcgcatctaccgacatgggtgaattggca
cttggccagaacctgctggttgcgttcatgccgtggaacggtttcaacttcgaggattcg
attctgatttcggagaaagtcgttgccgatgaccgctatacttcgattcatatcgaagaa
ctgacagttgtcgcccgcgataccaagctcggtgcggaagagattacccgcgatatttcc
aatctgtccgagcgcatgttaggtcgcctggatgattcgggtatctgctacataggcgcg
gaagtcgaagcgggcgatgtgctagtgggtaaagtgacgccgaaaggcgaaacccagctg
acgccggaagaaaaactgctgcgtgccatcttcggtgaaaaagcctcggatgttaaggat
acctcgttgcgcgtaccctcaggtatggccggcacggtgattgatgttcaggtgttcacc
cgtgagggtatcgaacgcgatgcacgcgccaagcagatcattgaagatcaattggccgaa
tacaagaaggatatggccgatcgtatgcgtatcgttgagaacgatacgtttgctcgcttg
cagcgtctggtgctgaataaagttgccaaaggcggtccgaaaaagctggccaaagacagt
gtggttacgcaggactatctggatagcaataaccgtcacgactggtttgacatccgcctg
gccgatgacgaatccagtcgtcagatggagtcgctaaaggacagtctcgatcagaagcgt
ctggaatttgacgccatgttcgaagagaaaaagaaaaaattgactgcgggcgacgaattg
cagccaggcgtgcaaaaaatggtcaaggtctatgttgcggtcaagcgtcgcttgcagccg
ggtgacaaaatggccggtcgtcacggtaacaagggtgtggtatccaagatcgtgccaatc
gaagatatgcctttcactgcagatggtacccctatggatatcgtgttgaatccgctgggc
gtaccttcgcgtatgaacgtcggtcagatattggaaacccatctgggttgggccgcaaag
ggtctgggcaaaaagatagacgaaatgttgcaggcacagaaacatgtgtcggaagtgcgc
gaattcctgaccaagatctataactcgaccggcaagcaggaagatatcgccagtttcagc
gatgatgaagtgatcgaattggcgcggaacctgcggcaaggcgtaccattcgcaacaccg
gtattcgacggcgcggcagaggaagagatcaaatctatgctggagttggccggtttgccg
cgcagcggacagatcaccctgtttgacggccgtacgggcgaagcgtttgaccgtaaagtc
acggtcggctacatgcacgtactgaaactgcatcacctggtggacgacaagatgcatgcg
cggtctaccggaccttacagtctggtcacgcagcagccattgggcggtaaagcgcagttc
ggtggtcagcgtttcggtgagatggaagtctgggcgctggaagcctatggcgcgtcgtac
atcctgcaggaaatgttgacagttaagtctgatgacgtgaatggtcgtaccaaggtctat
gagaacatcgttaagggtgagcataagattgatgcaggtatgccagagtctttcaacgtg
ttggtgaaagaaatccgttccttggcaattgatattgatctcgagcgttattga
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integrated database retrieval system
