Sulfitobacter sp. JL08: C1J05_11805
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Entry
C1J05_11805 CDS
T05585
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
suli
Sulfitobacter sp. JL08
Pathway
suli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1J05_11805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suli03019
]
C1J05_11805
03400 DNA repair and recombination proteins [BR:
suli03400
]
C1J05_11805
Enzymes [BR:
suli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1J05_11805
Messenger RNA biogenesis [BR:
suli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1J05_11805
DNA repair and recombination proteins [BR:
suli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1J05_11805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_30
AAA_11
WipA_Phos
Motif
Other DBs
NCBI-ProteinID:
AXI55083
UniProt:
A0A345RBZ6
LinkDB
All DBs
Position
2410971..2416085
Genome browser
AA seq
1704 aa
AA seq
DB search
MNKVTNISRLDVLSRSVSIDLEVDPKEAKIFALAAVAQDSDAPKVVAKNNIEAALTELDA
FCQGFDHVIGHNILRHDLPHLAAASPRFVALAEAPIDTLWLNPLAFPRNPYHHLVKHYQD
GRLQTGHVNDPEFDARLVFEVLENQIEAFVELDRKSPDALTAYHFLCCRSRQSGGFDQLF
TSVRGRTKPNMEEARGAIQRLLDGAACSSMLSTTLDQLDDTSLGWPLAYALSWISVAGGD
SVMPPWVRAQFSDAARIVRKLRDNNCGDEGCRYCSINNDPKKALDRWFGFEDFRPEPADE
FGRPLQEVIVSGAMKGESLLGILPTGTGKSICYQIPALSRFDKTGALTVVISPLVALMAD
QVQGMARSGIASAVTVNGMLSLPERNDALDKVRLGDASILLISPEQLRSVSVRSVLAQRE
VGLWVLDEAHCVSKWGHDFRPDYRYIGRFIKETSGDEIAPVLCLTATAKPDVVQDICSHF
KERLGLELTQVDGGASRSNLSFAVLPTQRSTKLADILDAIEANLPHEGASGAVVYCATRS
ATERVAEFLKQQGLAADYYHSTRSVDEKREIQEAFRVGDLRVIAATNAFGMGIDKPDIRL
VVHGDVPGSLENYLQEAGRAGRDRDPAQCVLLFNTEDVDRQFSLSARSRLARHEISAILK
AVHRLDNRTRKSGEVVATPGEIVKEEKEQEFQRDKDTDDTRVKTAIAWLEEAKLLRREEN
RVQIFPASLLVRDLEHAKTILDRAEITETRRLKLLDIVRHIINAPKEEGISTDVLSGASG
LPGPALRKALTDLEALGIANDDTNITIFVHVGVEDRSRVRLEEASRLEADLISQLREEAP
DADDGEPSPFNLAVTCQVLRDRGHGSVRPDIVEGLLRGMAQDGRDMEGGRGNLHVRRASR
GSLFVRLQRSWSVVEKTAEIRRQAAERLLSHLTGKVPKGVKGKDIAVETTLGDLLSAING
DAMLRGSVNDPNKLMDRALLWLHEQQVVTLGKGLSVFRPAMTLQLNPKGGSFTVQNFIPL
EEHYTEQTIQTHVMAAYAEKGLERINDAERLAQDYFELNRDAFMRRWMPGRGSEFRRQAT
GQTWTNIVDALGNTTQEQIVKDDREQTNVLVLAGPGSGKTRVLVHRIAYLVKIKREDPNG
ILVLAYNRHAAAEIRERLRGLIGDEARFVTVSTIHALAMRLIGASFAGHAGGESQDFKGL
LMDAVRLLRGDGLDKAAAEAMRETLIQGYRWLLVDEYQDVGPDEYALISAVAGRSLDDPD
LRISLFAVGDDDQNIYSFAGASVRHIRQFEQDYSAKPVFLTNNYRSAGNIISAANAVIEH
AADRMKVGHDITIDEARRKNPPGGEMASMDPVAQGRVQILECPPGNDAQAMAALDELLRL
SRLIPDWSWSKAAIISRDWRKLAPVRDYAEALGIPVELANEQLPGLWRMRDMQQFVSALR
EDRGQLLSVTDLTDKLNAIPGSRWTNRIGEGIGVLAREIDGRSLPAQDIIEWLAEWAGET
WGEQRGLKLLTAHRAKGLEFDDVVILDGGWERPSKNEDQDAPRRLFYVAMTRARRNLIVM
SNDNHEYLPTQSPAILSRAVKPDLASFPGPRRYFQSAEARMVDLSFAGRQRHNHPVHVAT
SEARVGDALALVCDHDRWQLTDANGRSLGRMAKSFSPPGNARFVRGEIAAILCWRKDDSD
EAYHHTIKREAWEVIVPELVFEEC
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggtaacaaacatcagtcgtttggacgttctaagtcgatctgtttcgatcgac
ctcgaagtcgatcccaaagaggcgaagatctttgcgcttgcggcagttgctcaggattcc
gatgcgccaaaggtggtcgccaaaaacaacattgaagcggctttgaccgaactcgacgca
ttctgccagggttttgaccacgtcatcgggcataatattctacgtcacgacttgccccat
ctggccgcagcgtcgccgaggttcgtggccttggctgaagcaccgatagatacgctctgg
ctgaaccctcttgcgtttccaagaaacccttaccaccacctggtgaaacactaccaggat
ggacgacttcagacaggtcatgtgaatgatcctgaatttgacgcccggctggtgttcgag
gttctggaaaaccagatcgaagcatttgttgagctcgatcgaaaatcgcccgacgccctt
acagcttaccactttctatgctgccgctctcggcagagcggtggtttcgatcagttattt
actagtgttcgaggcagaaccaagccaaatatggaagaagcacgaggtgcaatccaaaga
ttgctagatggcgccgcatgctcatcgatgctgtcgactactcttgaccaactcgacgac
accagccttggatggccgttagcgtacgctctgtcctggatttctgtggcaggtggggac
tcggtaatgccgccctgggtgcgcgcgcaattcagcgacgctgcacggattgtgagaaag
cttcgggacaacaactgcggcgatgaaggttgtcgttattgcagtatcaataacgacccc
aaaaaggctctggaccgatggtttggctttgaagattttcggcctgaacctgcggatgag
ttcggacgtccccttcaagaggtgatcgtttccggtgccatgaaaggcgaaagtcttctg
ggcatcctgcccactggtactggtaaatcaatctgttaccagatcccggcgctttcccgg
ttcgacaagacgggcgcattgactgtcgtgatctctcctctggtggcactcatggcagac
caggttcagggaatggctcgttctggcattgcctcggcagtcacagtcaatggtatgcta
tccctaccggagcggaacgacgctttggacaaagtgagactgggcgacgcatccatcttg
ctgatctcgccggaacagctccggagcgtttctgtgcggtccgtgcttgcgcaacgggag
gttggtctctgggttcttgacgaagcccattgtgtctcgaaatggggccacgattttcga
cctgactatcgctatatcggccggttcatcaaagagacctcaggtgacgaaatcgctccc
gtcctgtgcctcacggctactgcaaaacctgatgttgtccaggatatttgttcgcacttc
aaagaacgcctcggactcgaactgacccaggtcgatggcggcgcatcacgctccaacctg
agttttgcggttctgccaacacaacgctcaacgaagctggctgatatccttgatgcaatt
gaggcaaacctgccccacgaaggtgcctcaggagcggtcgtttattgcgcaacgcgcagc
gctactgaacgtgtggctgagtttctcaagcaacaggggcttgcagctgattactatcat
tcgacgcgcagcgtcgacgaaaagcgagaaattcaggaagcattcagggttggtgatctc
cgggtgatcgcggcaacaaatgcatttggcatgggtatcgataagcctgacattcgcctt
gtcgtacacggagatgtgcccgggtcgctggaaaactacctgcaggaagctggtcgagcc
gggcgcgatcgggatccggctcaatgtgttctgctgttcaatacagaagatgtcgatcgc
cagtttagcctgagcgcacgttcacgtcttgcgcggcatgaaatcagtgcgattttgaaa
gcagtgcatcggctggacaatcgaacacgtaagagcggcgaggtggttgctactccgggt
gaaattgtaaaagaggaaaaagagcaggaattccagcgtgataaggatacggatgataca
cgtgttaaaaccgcgatcgcctggctggaggaagcgaagcttctcaggcgcgaggaaaac
cgggttcagatattccctgcatcgcttcttgtacgtgatcttgagcatgcgaagacaatt
cttgatcgggctgagatcactgagacccggcgcctcaagctgctcgacatcgtccgacac
attatcaatgcgcccaaagaagaaggtatctcaactgacgtgctgagcggggccagtggc
ctgccaggcccggccttgcgcaaggccctgaccgatcttgaagccctcggcattgccaat
gacgataccaatataacgatttttgtacatgtgggtgttgaagacaggtcccgcgttcgg
cttgaagaagcctctagactggaagctgacctgatttcgcaattgcgtgaagaagcgccc
gatgcggacgatggcgaaccttctccatttaaccttgcggtcacctgtcaggtcctgcgc
gaccgtggccacggctccgtgcgacccgatattgtcgaaggtcttctgcggggaatggcg
caggacgggcgtgatatggagggcgggcgaggtaatctgcacgtgagacgagcatcgcgc
ggcagcctgttcgttcgattgcagcgttcctggtccgtggttgagaaaaccgcggagatc
cgcaggcaagccgctgaaagacttctttctcatcttactgggaaagttccgaaaggagtg
aagggcaaggacatcgcagttgagacgacgctcggcgatttgctgtctgcgatcaatgga
gacgcgatgcttcgtggttcagtcaacgatccgaacaagctcatggatcgagcgctcctg
tggcttcatgaacagcaggttgtgacgcttggcaaaggcctctcagtgttccgacctgcg
atgacgctccaactcaatccgaaaggtggaagtttcactgttcagaattttatcccactt
gaagaacactacacggaacagactatccagactcatgtcatggccgcttatgcagaaaaa
gggcttgaacgcattaatgacgccgagaggctggctcaggattatttcgaacttaatcgc
gatgcatttatgcgccgatggatgcccggccgcggatctgaattccgcaggcaggccacc
gggcaaacgtggacgaacatcgttgatgcgctcggcaacacgacccaggagcaaatcgtc
aaagacgaccgcgaacaaaccaatgtgcttgtacttgcagggcctggctccggaaagacc
cgggtgttggtgcatcgcattgcgtatcttgtgaaaatcaagcgcgaagacccgaacggg
atactggttcttgcatacaatcgccacgcagccgctgaaatccgcgaaagactgcgcggc
ctgattggcgacgaagcacgctttgtaacggtttccacgattcacgctctcgccatgcgg
ctcatcggcgcaagttttgccggtcacgcagggggcgaaagccaggacttcaagggtctg
ctgatggacgcggtgcgacttttgcgcggcgacgggctggataaagcggcggcagaagca
atgcgggaaaccttgattcagggataccgctggctattggtcgatgaataccaggatgtg
ggtccagatgagtatgctctgatctcggcggtggctggtcgaagtctcgatgatcctgat
cttcgcataagcctgtttgcagtcggagatgacgatcagaatatctactcatttgccggt
gcctcggtccggcacatcaggcaattcgaacaggactactcggcgaagcctgtctttctc
acaaacaactatcgctcagctggaaacatcatttctgccgcgaatgccgtcattgaacac
gccgcagacaggatgaaggttggccatgacatcactatcgatgaggcccgacgcaaaaat
ccacccggtggagaaatggcgtcaatggatcccgtcgctcagggacgggtacaaatactt
gaatgtccgcccggcaatgacgctcaagccatggccgcccttgacgaacttcttcgtttg
tcgcgcctcatccctgactggagttggtctaaggccgctattatctcgcgggactggcgc
aaattagcgccggtgcgagactatgccgaggctcttggtattccagtcgagctcgccaat
gaacagctccccgggctgtggcgaatgcgggatatgcagcaatttgtcagtgcacttcgt
gaggatcgcggacaactgctgtcggtaactgacttaaccgataagctgaacgcaattcca
ggttctcgatggaccaaccgaataggcgaaggcatcggtgttcttgcgcgagaaatcgat
ggccgaagtctccctgctcaagacatcatcgaatggcttgctgaatgggcaggcgagaca
tggggcgaacagcgcggtttgaaacttctaaccgcgcaccgcgccaaggggcttgaattt
gacgatgtggtgatcctagacggcggctgggagcgtcccagcaagaacgaagatcaggac
gcgcctcgtaggcttttctatgtggctatgacacgtgcacgaagaaacctgatcgtgatg
agcaatgataatcacgaatatctgccaacccagtctccggcgattttaagtcgggctgtt
aagccagatttagcttcttttccggggccgagacgctattttcagtccgcggaagcacgc
atggtcgacctctccttcgctgggcgtcaacgccacaatcatcctgttcatgtggctaca
tcagaggctcgagttggcgacgctttggctcttgtttgcgatcatgatcgctggcaattg
acggatgctaacggccggagccttggccgcatggcaaagagcttctcccctcctggaaac
gcgcgatttgtgcgtggcgaaattgcagcgatcctgtgctggcgaaaagatgatagcgat
gaagcttatcatcacacaatcaagcgggaggcttgggaagtcatcgttccggagttggta
ttcgaagaatgctga
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integrated database retrieval system
