Sulfitobacter sp. JL08: C1J05_13205
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Entry
C1J05_13205 CDS
T05585
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
suli
Sulfitobacter sp. JL08
Pathway
suli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1J05_13205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suli03019
]
C1J05_13205
Messenger RNA biogenesis [BR:
suli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1J05_13205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AXI55329
LinkDB
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Position
complement(2696283..2697953)
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AA seq
556 aa
AA seq
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MSNERLIYLPLGGAGEIGMNAYVYGYGKPGKERLILVDLGVTFPDMDGTPGVDLILPDMT
WLKQNADRLDAIFITHAHEDHVGAVPHFYADLKAPIYARPFTANIARAKLEDNGHPAEAV
SVVSQWPQQTVAGPFSVGFLPISHSIPESSALVIDSPDGRVIHTGDFKLDKTPIVGEPFD
PELWAEVAKPGVKALVCDSTNVFSRHAGRSEVSVGPEIEALVSAANGMVVATTFASNVAR
VKTLAEAGDRAGRSIVLLGRAMKRMVEAAIETGVLTGFPRVVSPEDAKGIPRENLMLLVT
GSQGERRAASAQLARGTYQGFEMKDGDLFLFSSKTIPGNERGVIRIVNAYSEIGVDVVDE
SSGGHYHVSGHANRPDLETMHDLVKPQMLIPMHGEHRHLREHVKLAASKGLQGVVAVNGM
MIDLSGNAPTVAEYIETGRTYLDGTVQIGALDGVVRNRIRMALNGHVIVTVIIDDENEPL
GDAWCETMGLAEVGHSRAPLVDVLEEDLSQFLNRANEKTLSDDAKLEEALRRIVRQSTQN
EIGKKPEVTVVVSRLS
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgaacgtttgatttaccttccccttggcggggcgggtgaaattggtatgaac
gcctatgtgtacggctatggaaaacctggcaaggaacgcctgattctggtcgatctgggt
gttacattccccgatatggatggcacgccgggggttgatctgatcctgcccgacatgacc
tggctgaaacagaatgccgaccggcttgatgcgatattcatcacccatgcccacgaggac
catgttggcgcggtgccgcatttctatgccgatctgaaagcgccgatatatgcgcgcccg
ttcacggccaatatcgcacgcgccaaactggaagataacggccatcctgccgaagctgtt
agtgttgtttcccaatggcctcagcaaaccgtggcggggcctttttctgtcggctttctg
ccaatctcgcattcgatccccgaatcttcagctcttgtgatcgacagcccggacgggcgg
gtgattcacaccggtgatttcaagctggataaaacacctattgtcggcgaaccgtttgat
cccgagctatgggccgaggtggccaaaccgggtgtcaaagcgttagtctgcgacagtaca
aacgtattttcgcgccatgctggccggtccgaagtgtcggttggccccgagatcgaagcg
ctggtcagtgcggccaatggcatggtggtcgccacgacatttgcatccaacgtggcccgt
gtcaaaacgctggccgaggcgggcgaccgtgccgggcgttcgatcgtgctgctggggcgg
gcgatgaaacgtatggtggaagcggccattgaaaccggtgtgctgacagggtttccccgt
gtcgtcagccccgaagatgccaaaggcattccgcgtgaaaacctgatgctgctggtaaca
ggcagccagggcgaacggcgcgccgccagcgcccagcttgcgcgcggaacctatcagggg
ttcgagatgaaagacggtgatctgttcctgttttcatccaaaaccattcccggcaacgaa
cgcggcgtcattcggattgtgaacgcgtattccgaaattggtgtggatgtggtggatgaa
agctcgggcgggcattaccacgtgtccggtcacgcaaatcgccccgatctcgaaacgatg
cacgatctggtcaagccgcagatgctgatcccgatgcacggggaacaccgccatttgcgc
gaacatgtcaaactggccgccagcaaggggctgcagggggtcgtggccgtgaacggtatg
atgatcgacctgagtggcaatgccccgacggtggcggaatacatcgaaacaggacgtacc
tatctggatgggacggttcagatcggcgcgctggacggggttgtgcgcaaccggatccgg
atggcgctgaacggccatgtgatcgtgacggtgatcatcgatgatgaaaacgaaccattg
ggcgatgcatggtgtgaaaccatggggttggcagaggttgggcacagccgtgcgccgctg
gtcgacgtgctggaagaagacctgagccagtttctgaatcgcgcgaatgaaaaaacgctg
tcggatgacgccaaactggaagaggcgttacgtcgtatagtgcgtcaaagcacgcagaac
gaaatcggcaaaaagccggaagtgaccgtggtggtcagcaggcttagttaa
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