Sulfitobacter sp. JL08: C1J05_20930
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Entry
C1J05_20930 CDS
T05585
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
suli
Sulfitobacter sp. JL08
Pathway
suli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1J05_20930 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suli03019
]
C1J05_20930 (rnr)
03016 Transfer RNA biogenesis [BR:
suli03016
]
C1J05_20930 (rnr)
Enzymes [BR:
suli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C1J05_20930 (rnr)
Messenger RNA biogenesis [BR:
suli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1J05_20930 (rnr)
Transfer RNA biogenesis [BR:
suli03016
]
Prokaryotic type
tRNA degradation factors
C1J05_20930 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR
Motif
Other DBs
NCBI-ProteinID:
AXI56645
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All DBs
Position
complement(4272441..4274693)
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AA seq
750 aa
AA seq
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MARIPTKPEILEWISNNPTLTAKRDIAKAFGIKGAARIDLKRVLKELEAEGHLEKRKKTY
RDPDRLPPVSVLQVLAPDADGDLFARPLEWHGEGVEPIVLMVLRASDPALGEGDRILARL
THVQEEDHNYEARLIRRIGSNPKRILGVFRKKAEGGRILPIDKGRESEWVVPDGATNGAK
DGELVEAEQSGPKDRLGLPRARIVERLGDPSAPRAVSLIAIHQHGIPDDFPDEVIAEADA
AKPQGLNGRQDLRDLPLITIDPSDARDHDDACFAQADDDPKNPGGYIVWVAIADVAAYVT
SGSALDREARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRPCVAVRMVLDAHGRKLS
HRFVRGLMRSPASLNYQEVQNAIDGTPNEKTAPLLDTVLKPLFAAYHALDNARKLRQPLD
LELPERKVELGEDGTVKSVQFRARLDAHKLIEEFMVLANVAAAETLIAKKSPLLFRVHEE
PTPEKLESLRDTAQAAGFNLAKGQVLKTSHLNRLLNDAAGTEEAELINLSTLRSMAQAYY
SPANFGHFGLALQHYAHFTSPIRRYADLIVHRALISAHKWGDDGLTPDDIERLDATAAHI
SDTERRSMMAERDTNDRYLASYLSERVGNEFTGRISGIARFGAFVKLDETGADGLVPIRS
LGREFFHFDAKNGTLMGSDTGLTISIGQRATVRLTEAAPVTGGIGLELLTLDGKALPKGV
SPAGRSPRRKISKAKRKSDKTKRKLTRSRR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtatccccacaaaacccgagattctggaatggatttccaacaatccgaccctg
accgccaagcgcgatatcgccaaggcattcgggatcaagggcgctgcccgaattgatctg
aaacgggtgctgaaagaactggaagccgaagggcatctggaaaaaagaaaaaagacctat
cgcgatcctgatcgtctgcccccggtaagtgttttgcaggttcttgcccctgatgctgac
ggagatttgtttgcacgccctctggaatggcacggtgagggcgtcgaacccatcgtattg
atggtgttgcgggcatccgatccggcgctgggcgaaggtgatcgcattctggcccgtctg
acccacgtgcaggaagaagaccacaattacgaagcccgtttgatccgccggatcggaagc
aaccccaaaagaatactgggcgtgtttcgcaagaaagcggaaggcgggcggatcctgccc
atcgataaaggccgcgaaagcgaatgggttgtccctgacggcgcgaccaacggcgccaag
gacggtgaactggtcgaagctgaacaatcgggccccaaggacaggttggggctgccgcgc
gcccgcattgtcgaacggttgggcgatccttccgcgccgcgcgcagtgtcgctgattgca
atccatcagcacggaatccccgatgattttccggacgaagtgattgccgaagcggatgct
gccaaaccgcaaggtttgaacgggcgacaggacttgcgggatttgccgctgatcaccatt
gatccatccgacgcgcgcgatcatgacgatgcttgttttgcgcaggctgatgacgacccc
aagaacccgggtggttatattgtctgggtggcgattgcagatgttgccgcctatgtcaca
tcaggatcggcgctggaccgcgaggcgcgaaagcgcggcaattccagctattttccggac
cgcgttgttccgatgctgccagaccgtttgtcgggcgatttgtgttcgctgcacgaaggt
gtcccgcgcccttgcgtggccgttcggatggttctggatgcacacgggcgcaaactgagc
catcgtttcgtgcggggattgatgcggtcgcccgcgtcgctgaattatcaggaagtccag
aacgccattgacggaaccccgaacgaaaaaaccgcgccattgcttgatacggttctgaaa
ccgctatttgccgcctaccacgcgttggacaatgcccggaaactgcgccaaccactggat
cttgaactgccggaacgcaaagttgagctgggcgaggacggcaccgtcaagtcagttcaa
ttccgcgcacgtcttgatgcgcacaaactgatcgaagaattcatggtgctggccaatgtc
gccgcagcagaaaccctgatcgcaaaaaaatcgccgctgctgttcagggtacacgaagaa
ccgacacccgaaaaacttgaaagcctgcgcgatacggcgcaagcggcaggtttcaatctg
gccaagggtcaggtcctgaaaaccagccacctgaaccggctgctgaatgatgctgcggga
acagaagaagccgaactgatcaatctttcgaccctgcgttcgatggcgcaggcctattac
agccctgcaaatttcggccattttggtctggcattgcaacattacgcacattttacgtca
cccatccggcgctatgccgacctgattgtgcatcgcgctttgatcagtgcgcacaagtgg
ggtgatgatggcctgacaccggatgacattgaacgactggatgccaccgctgcacatatt
tcggataccgaacgccggtcgatgatggcggagcgggataccaatgatcgctatcttgca
tcctatctgtctgagcgcgtgggtaacgaatttaccggacgcatcagcgggattgcgcgg
ttcggcgcttttgtgaaactggatgaaacaggtgctgacgggcttgtgccgatccgttcc
ttggggcgcgagttttttcatttcgatgccaagaacggcacattgatggggtcggatacc
ggattgacgatcagcatagggcaacgcgccactgtacgcctgaccgaagccgcccctgtg
accggtggaatcggtctggaactgctgacgcttgatggaaaagcactgccgaaaggggtt
tcccccgcaggtcgttcaccccgccgcaagatcagcaaggccaaacgcaaaagcgacaag
acaaagcgcaagctgacgcggtcgcgccgctaa
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