Sulfurospirillum diekertiae JPD-1: SJPD1_0079
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Entry
SJPD1_0079 CDS
T05109
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sulj
Sulfurospirillum diekertiae JPD-1
Pathway
sulj03410
Base excision repair
sulj03430
Mismatch repair
sulj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sulj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SJPD1_0079
03430 Mismatch repair
SJPD1_0079
03440 Homologous recombination
SJPD1_0079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sulj03400
]
SJPD1_0079
DNA repair and recombination proteins [BR:
sulj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SJPD1_0079
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SJPD1_0079
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SJPD1_0079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ATB68209
UniProt:
A0A290HS34
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All DBs
Position
68924..70507
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AA seq
527 aa
AA seq
DB search
MARLLSKEEIKRILQSRFENDECTRLNEIPKPSSLKDIAKASKRIADAMRNHERIAIVGD
YDVDGVISSVILSQFFDDLGVDYSLIIPNRFTDGYGLNPDIVAKLDVHVIITVDNGISAI
EAAQICKHQGIDLIITDHHSIPSILPDAYAIVNPKQEDCTFPHCEICGAQVAWYLVAALK
EELGVDYNLSSFLDLLCIAIMADMMELVGMNRVMVKKGIVELNHSKRAAFEAIKQYFGKK
TLEGDDISFLIGPLINSSGRMEDAIFSYEFLKSKNVDDALQKLDYIVSLNEARKEEERLL
FESTLPYVKENENIIVAWGEEWHEGIVGIVASRLSKRFKKPAIVFSIKDEKAKGSARGIG
NVDILELIRSQEPLLLGFGGHKGAAGVSIEIKHLEQFRINLVEASSQFTQEAMEADNDLL
GEISADQIDFELLEILENQEPYGQKNPKPSFLLRNIAVKVDRLIGKDGQHLKLILQEGSN
ALEALFFNYDIKAKQGDRIDILFTVSRNDYRGLVTPQLLIKQIVKKY
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggctaggttgctgagtaaagaggagataaaacggattcttcaaagcagatttgagaac
gacgagtgtacccgtttaaatgagattcctaagccctcctctttaaaagatattgctaag
gcatctaaacgtattgctgatgcgatgcgtaaccatgaacgtattgccattgtgggtgat
tatgatgtggatggtgtcatttcttccgttattttaagccaattttttgatgatctaggg
gttgattactccttgattattcccaaccgttttaccgatgggtatggcttaaatccagac
attgttgcaaaacttgatgtccatgtgattatcaccgttgataatggtatttctgcgatt
gaagcagctcagatttgtaaacatcagggtattgaccttatcatcaccgatcatcatagt
attccttctattttgcctgatgcgtatgctattgtcaatcccaaacaagaagattgcact
tttcctcattgtgaaatttgcggtgcacaagtagcgtggtatttagttgctgcgctcaaa
gaagaactgggggtggactataacctttctagcttcttagatctcctttgtattgctatt
atggcggatatgatggagcttgtagggatgaaccgtgtcatggttaaaaaaggtattgta
gaacttaatcactcaaaacgtgctgcatttgaggcaattaaacagtattttggtaaaaaa
actttagaaggggatgatatttcatttttgatcggtcctttgattaatagttcaggtcgg
atggaagatgcaattttttcctatgaatttttaaagtctaaaaatgtagacgatgcttta
caaaaacttgattatattgtgtccctgaatgaagcccgtaaagaagaagagcgtctcctc
tttgaatcaacattgccttatgtcaaagagaatgaaaatatcatcgttgcatggggtgaa
gagtggcatgagggtatcgtagggattgtcgcctctaggctttctaaacgctttaaaaag
cctgctattgtcttttctatcaaagatgaaaaggccaaaggcagtgcgaggggtattggt
aatgtagatatcttagagcttattcgttcacaagagcctcttttgcttgggtttggaggg
cataagggtgcagcaggtgtttcgattgaaattaaacatttagaacaatttagaatcaat
ttggtggaagcatccagtcagtttacacaagaggcaatggaagctgataatgatctctta
ggagaaattagtgcggatcagattgattttgagttattagaaattttagagaaccaagag
ccttatggtcaaaaaaatcctaagccaagctttttattacgtaatattgccgtcaaagtt
gatcgtttgattggtaaagatggacagcatttaaagcttattttacaagaggggagcaat
gcccttgaagcgctcttttttaactatgatattaaagctaagcaaggtgatcgtatcgat
attttgtttacggtttcccgcaatgattatcgtgggctcgtaacacctcagcttttaatc
aaacagattgtaaagaagtattaa
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