Sulfurospirillum diekertiae JPD-1: SJPD1_0441
Help
Entry
SJPD1_0441 CDS
T05109
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sulj
Sulfurospirillum diekertiae JPD-1
Pathway
sulj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sulj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SJPD1_0441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sulj03021
]
SJPD1_0441
03400 DNA repair and recombination proteins [BR:
sulj03400
]
SJPD1_0441
Enzymes [BR:
sulj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SJPD1_0441
Transcription machinery [BR:
sulj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SJPD1_0441
DNA repair and recombination proteins [BR:
sulj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SJPD1_0441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF6675
DNA_pol_alpha_N
TTC3
Motif
Other DBs
NCBI-ProteinID:
ATB68564
UniProt:
A0A290HPK8
LinkDB
All DBs
Position
410464..414990
Genome browser
AA seq
1508 aa
AA seq
DB search
MKRLEPIEIHEESRPRDFKAFQLRLASPEKIRSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGIKCEKCGVEVTSTKVRRSRMGHIELVTPVAHIWYVNS
LPSRVGTLLGVKMKDLERVLYYEAYIVEQAGEAFYDAENKNKVAVYDVLNEEQYQSLQQR
FEDTGFVAKMGGEVIRDLLANIDLVEVLGQLKEDINQTSSEAKKKTIVKRLKVVEAFLNS
GNRPEWMMITMLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNARLKRLMELDAPEI
IIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPNLKMDQCGLPKQMALELFKPHLLARLEEKGYATTVKQAKKMIDMKTNEVWE
CLAEVVKGHPVMLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCSAFNADFDGDQMAVHV
PLSQEAIAECKILMLSSMNILLPASGKAVTVPTQDMVLGLYYLTLEKPHAKGSNKIFANV
DEVHIAIDAGFLDIHAKIKTRINDRVLFTTAGRLILKSILPDFVPEAHWNRVLKKKNIGA
LVDFVFKEGGIGITAGFLDNIKRLGFKYATESGISVSIDDIRVPEAKVKKIKEAKKKVRE
IQKQFSSGLLTEQERYNKIIDIWTDTNNEVASEMMKLTESHKGGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLIDVAQNVKVTMDDCGTHEGVEITEISESGELVESLYERATGRVLAEDVIDTITN
EVLFTEGTLIDEKSAQALKEASIKSVVIRTPITCKAKKGVCAKCYGTNLAEGTLVRPGEA
VGIISAQSIGEPGTQLTLRTFHIGGTASTESQDRQVIAQKEGFIRYYNVKTYITKEGKNI
VANRRNAAVLLVEPKIKAPFKGTIEIDTAHEETAITITSGSGENIRYTLRKSDFAKPNEL
AGVSGKIEGKFYIPYVSGDMVEVNESIVEVIKEGWNVPSRIPYASELKVKNGDPIIQKIH
ADAKGVVKYYKLHGDYLDRIHDIEKGHVVKEKGIFAVVADNDDREAIRHYIPRDSIIDIN
DNSIVEGKTLLAYPSTSEQITIAEWDPYSTPIIAEDAGTVTFEDIEPGISATEQFDDMTG
QSRLVINEYLPSGMKPTIIIANKNGEIVKYQLEPKTAIFVQNGVTVGLADLIGRTPKAIA
KSKDITGGLPRISELFEARRPKNATVIAEIDGTIRFGKPLRSKERIIIEAADGTSVEYLV
DRNTQIHVQPGEFVHAGERLTDGVISSHDILRIMGEKALHYYLISEIQQVYRGQGVAIND
KHIEVIVSQMLRQVRIVDSGDTKFIMGDLISRRRFREENEAVMKMGGEPAIAEPTLLGVT
RAAIGSDSVISAASFQETTKVLTEASIAGKMDMLEDLKENVILGRMIPVGTGLYQNKQFN
IELNPSRG
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgactagaaccaattgagattcacgaagagagccgtcctagggactttaaagca
tttcaattaagacttgcaagtccagaaaagattcgctcatggagttatggagaggttaaa
aaaccagaaaccattaactatcgtacgctcaaaccagagcgcgatggacttttctgtgcg
aaaatctttggacccgtcagagattatgaatgtctgtgcggaaaatataaaaagatgcgt
tacaaaggcatcaaatgtgaaaaatgtggcgttgaagtaacgagcaccaaagtgagacgt
tcacgtatgggacacatcgagttagtaactcctgtggctcatatatggtatgttaactcg
cttccaagtcgtgtgggaacattgcttggtgttaagatgaaagatcttgagcgcgtactt
tactatgaagcttacattgttgagcaagcaggcgaagcgttttacgatgcagaaaacaaa
aataaagttgcagtttatgatgttcttaatgaagaacaatatcaatcattgcagcaacgt
tttgaagatactggttttgtggcaaaaatgggtggcgaagttattcgtgatttattagcg
aatattgaccttgtcgaagttcttggtcaacttaaggaagatattaaccaaaccagttcc
gaagcaaagaaaaaaactattgtaaaacgtctcaaagtcgttgaagcattccttaacagc
ggtaaccgtcctgaatggatgatgattacaatgttgccagtccttccgccagatcttaga
ccacttgtggcactggatggtggaaagtttgcagtaagtgacgtcaatgacctgtatcgt
cgtgttatcaacagaaatgctcgtttgaaacgtttaatggaactcgatgcaccagaaatt
attattcgcaacgaaaaacgtatgttacaagaagcggttgatgcgctctttgataatggt
cgccgtgccaatgcagtaaaaggtgctaacaaacgtcctttaaaatcactttcagagatt
attaaaggtaaacaaggacgtttccgtcaaaatctactcggaaaaagggttgacttttca
ggtcgttctgttattgttgttggcccaaatttgaaaatggatcagtgcggtcttcctaaa
cagatggcattggagcttttcaaaccacatttgttagcacgtcttgaagaaaaagggtat
gcaacaacggttaagcaagccaaaaaaatgattgacatgaaaaccaatgaagtatgggaa
tgtttagcggaggtggtcaaaggtcatccagttatgttaaaccgtgcaccaacacttcac
aagctttccattcaggcatttcatcctgtcttgattgatggaaaagcgattcgtttgcat
cctcttgtatgttctgcctttaacgcggacttcgatggtgatcaaatggcggttcacgtt
ccactatcacaagaggccattgctgagtgtaaaattttgatgctaagttcgatgaatatc
ttgcttccagcttcaggtaaagcggtaactgttccaacacaagatatggtcttgggtctt
tactatttaacacttgaaaaaccgcatgcaaaaggaagtaataaaatttttgcaaatgtg
gatgaagttcatattgcgattgatgcaggatttttagatattcatgccaaaattaaaaca
cgtattaatgacagagtgctctttacaacagcgggtcgcttgatcttaaaatcaatctta
ccagattttgtacctgaggctcactggaacagagtattgaaaaagaaaaatatcggtgct
ttagttgattttgtttttaaagagggtggtattggtattactgcaggattcttagataat
atcaaaagactcggctttaaatacgcaacagagtcaggtatttcggtttcaattgatgat
atccgtgttcctgaagctaaagtaaaaaaaatcaaagaagcgaagaaaaaagtacgcgag
atccaaaaacagttcagttctggtttattaaccgagcaagaacgttacaacaaaattatt
gatatttggacggatacgaacaatgaagtggcttctgagatgatgaagcttacggaaagt
cataaaggcggctttaactctatttatatgatggcagattctggtgcgcgtggttctgct
gcgcaaattagacagttagcaggtatgaggggacttatggcaaaaccggatggaagtatt
attgaaacaccaattatttcaaacttccgtgaaggtctaaacgttcttgaatactttatt
tcaacgcacggtgcacgtaaaggtcttgcggatacggctcttaaaacagccaacgctggt
tacttgaccagaaagctcattgacgttgcacaaaacgttaaagttacgatggatgattgt
ggtacacacgaaggtgttgagattactgaaatcagcgagagcggtgagcttgtagagtca
ttgtatgagagagcaacaggtcgtgttcttgcagaagatgttatcgatacgatcaccaat
gaagttctttttacagagggaacattgattgatgagaagagcgcacaagcccttaaagag
gcgagcattaagtcagttgttattcgtacaccgattacatgtaaagctaaaaaaggtgtc
tgtgctaaatgttatggtacaaacttggctgagggcacattggttcgtcctggtgaagcg
gttggtattatttcagctcaatctattggtgagcctggtactcagttgaccttgcgtaca
ttccacatcggtggtacagcatcaacagaatcacaagatcgtcaagttattgcccaaaaa
gagggttttatccgttattacaatgtaaaaacttatattactaaagaaggcaagaatatc
gttgctaaccgcagaaatgcagctgttcttcttgtagaaccaaagatcaaagcaccattt
aaaggtacaattgaaattgacacagcacatgaagagacagcgattacgattacaagtggt
agcggtgaaaacattcgctatactctccgtaaaagtgactttgctaaacccaatgagcta
gcgggtgtgagtggtaaaattgagggtaaattttatattccttatgttagcggcgatatg
gttgaagtcaatgagagcatcgtagaggtgattaaagagggttggaatgttccaagtcgt
atcccttatgcgagtgaactcaaagtaaaaaatggtgacccaattatccaaaaaattcat
gcagatgctaaaggtgttgttaaatactataagcttcatggagattatttggatcgtatc
catgatattgaaaaaggtcatgtggttaaagaaaaaggtatttttgcagtggttgcagac
aatgatgatagagaagcaatccgccactatattccacgtgattctatcattgatattaat
gataatagcattgtagaaggaaaaacactccttgcatatccttcaaccagtgagcaaatt
accatcgctgagtgggatccatactctacgccaattattgcagaagatgcgggtacggtt
acatttgaagatattgaaccagggattagtgcgacggaacaatttgatgatatgacaggt
caaagtagacttgtgattaacgaatatcttccaagtggcatgaaaccaaccattattatt
gccaataaaaatggcgagattgttaagtatcaattagagccaaaaacagccatcttcgtt
caaaatggtgtaacggttggtttagcagatttgattggtagaacaccaaaagcgattgca
aaatcaaaagatatcaccggtggtcttccacgtattagtgagctttttgaagcacgtcgt
cctaaaaatgcaaccgtcattgcggaaattgatggaacgattcgttttggtaaaccactt
cgttcaaaagagcgtattattattgaagcagcggatggtacaagtgtagagtatttagtg
gatcgtaatacacaaattcacgttcaaccaggtgaatttgttcatgcaggtgagcgtctt
acggatggtgttatttcaagccatgatattttacgtattatgggtgaaaaagcacttcac
tattatttgatcagtgaaattcaacaagtttaccgtggacaaggtgttgcaattaacgat
aaacacattgaggttatcgtttctcaaatgcttcgccaagtacgtattgttgacagtggc
gatacaaagtttatcatgggtgatttgattagccgtagacgtttccgtgaagagaatgaa
gcggttatgaaaatgggtggagagccagcgattgctgagccaacacttttaggtgttacc
cgtgcagcgatcggtagtgatagtgttatatcagcggcttcattccaagagacaaccaaa
gttctaacggaagcgagtatcgcaggtaagatggatatgctcgaggatcttaaagaaaat
gttatcttaggacgtatgattccagtaggaaccggtctttatcaaaacaaacaatttaat
attgagttgaacccaagcagaggttaa
DBGET
integrated database retrieval system
