Sulfurospirillum diekertiae JPD-1: SJPD1_1916
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Entry
SJPD1_1916 CDS
T05109
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sulj
Sulfurospirillum diekertiae JPD-1
Pathway
sulj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJPD1_1916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulj03019
]
SJPD1_1916
03400 DNA repair and recombination proteins [BR:
sulj03400
]
SJPD1_1916
Enzymes [BR:
sulj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJPD1_1916
Messenger RNA biogenesis [BR:
sulj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJPD1_1916
DNA repair and recombination proteins [BR:
sulj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SJPD1_1916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATB70021
UniProt:
A0A290HFL0
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All DBs
Position
complement(1856818..1858605)
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AA seq
595 aa
AA seq
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MTEPYRILQSVFGHHRFRAYQEEAVNAILERRDIMMILPTGAGKSLCYQLPSLVMEGLSV
VISPLLALMHDQITALSTFGIKASMISSMQSPQEIQETMQACQKGEIKLLYIAPERLKGE
SFLHFLQTLPINFFVIDEAHCVSEWGHEFREDYRQLFRLKLYFPQTPIAAFTATATKIVE
HDILHQLSLSNPLIIRAKVERDNLTINADYRNSNGREQLLSFLSAFENESGIIYTLSRKE
TESLAQFLSTRNILARAYHAGLPTEEKNETFRAFLNDEIQVVVATIAFGMGIDKSNIRFV
VHMSLPKTIENYYQEIGRAGRDGLPSSTLLLFSNSDIVEHKRRIGEQPASEYQTVAYEKL
EAMAKFASSQVCRHQQIAAYFDDTILTCQTRCDNCIDGEKQSVDISHEALKLLSSIYRTG
QRFGLQYVVDVLMGANSEKIVQNGHQSLSVFGIGNDKTKAQWLSIGDRLMELGALNVGEY
RVVSLSEYGAQIIKERLSVSIHAKRLEERQKVKKAKKVVLGTFELSIFEKLRALRSKIAK
ENSIPPYVVFSDKTLKEMAEKLPLDKEAMLEVSGVGEVKFERYGEAFLELCEKLS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagccataccgtattcttcaaagtgtctttggacaccaccgttttagagcgtat
caagaagaggctgttaatgctatcttagaacgtcgagacattatgatgatcttgcccaca
ggagcagggaagtctttgtgttatcagcttccctctttggtgatggaaggacttagcgta
gtcatttcaccgcttttagccttgatgcacgaccaaattaccgcactttccacctttggt
atcaaagcttcgatgatctcttcgatgcaatcacctcaagagatacaagagacgatgcaa
gcgtgccaaaaaggtgagatcaaactgttgtacattgcacctgagcgcttaaaaggtgag
tcatttttacactttttgcaaacccttccgatcaatttttttgtcattgatgaagcacat
tgtgtgagcgaatgggggcatgaatttagagaagattaccgacaactctttcgcctcaaa
ctctattttccgcaaacacccattgccgcgtttacggcaacggcgacaaagatcgttgag
cacgatattctgcatcagctcagtctctcaaacccgttaatcattcgtgccaaagtagag
cgtgataatctcacgatcaacgcggactatcgcaactccaatgggcgcgagcaactcctc
tcttttttgagtgcgtttgaaaacgaaagcggcatcatttataccttaagtcgcaaagag
acggaaagcttggcgcagtttttaagcacacgcaatatccttgcacgtgcatatcatgcg
ggacttccgaccgaagagaaaaatgagacctttcgcgcttttttaaacgatgagattcag
gtcgttgtggcaaccattgcctttggtatgggcatcgataagagcaatattcgttttgtg
gtgcatatgtcactgccaaaaaccatcgagaactattaccaagaaatcgggcgtgcaggg
cgtgatggattgccgtcttctaccttactgctcttttccaactcggacatcgtggaacac
aagcgtcgtattggagaacagcccgcttctgagtatcaaacagtggcgtatgaaaagctc
gaagcgatggcaaaatttgcctcgtcgcaggtatgcaggcatcagcaaatcgcagcctat
tttgacgataccattcttacatgtcaaacgcgttgcgacaactgcatcgatggcgaaaag
cagagtgtggacatttcgcatgaagcattaaaacttctctcaagcatctaccgaacgggg
caacgttttggactgcaatacgtggtcgatgtcttaatgggtgcaaacagcgaaaagatc
gtgcaaaacggacatcaaagcctttctgtttttggcatcggaaacgataaaaccaaagcg
caatggctcagcatcggcgataggttgatggagctaggtgcgctcaatgtgggtgaatat
cgcgtggtgagcctcagtgaatatggcgcgcaaatcatcaaagagcgtttaagcgtaagc
attcatgcgaagcgtttggaagagcgtcaaaaggtcaaaaaagccaaaaaggttgtgttg
ggtacatttgagctctccatttttgagaagttacgcgcgttgcgatcaaaaattgcaaaa
gaaaatagcattccaccgtatgtcgtttttagcgataaaaccctcaaagagatggcggaa
aaactcccactggataaagaagcgatgctggaggtcagtggggtcggtgaagtgaagttt
gagcgctatggtgaagcctttttggagttgtgcgaaaagctctcatag
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