Sulfurospirillum diekertiae JPD-1: SJPD1_1999
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Entry
SJPD1_1999 CDS
T05109
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sulj
Sulfurospirillum diekertiae JPD-1
Pathway
sulj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sulj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SJPD1_1999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sulj03400
]
SJPD1_1999
Enzymes [BR:
sulj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJPD1_1999
DNA repair and recombination proteins [BR:
sulj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SJPD1_1999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATB70104
UniProt:
A0A290HTZ8
LinkDB
All DBs
Position
complement(1933458..1936427)
Genome browser
AA seq
989 aa
AA seq
DB search
MLQAACYEFLQTKNDLQLLGVKGEKEAFLASEVALFLGKKSYVLPDLRANSGDDLLSFHE
EIVELLRVLQAFYKDNSPKKILIAPLRTLLTPLPKAELFDTLSLEFGMRLHLEHFKEQMF
YWGYLAVDVVQDKGEISVRGDIIDIFPPDSEKALRLSLFDDEVESIRFFDCESQKSAKEE
LESYTLFPALFALDEERHTLMQKRIDSLKSDSFTKDIHSLGLWILGESGAVYTEAFKTYL
SMDAVAELEEIALFDEVGAKKLQSLPSISEAKAYREIAPSNIKTFLELHQNKKITLLAKN
EVLLRIVDIEPLHVKWIQSERIVNIMNAEEIILSLNKPSTKIKRKRANIVLDELKNGDYV
VHENYGIGIFKGLTQVTVLGATKDFVLIEYLGDDKLLLPVENLHVIDRYIGESGGLVSVD
RLGKGSFQKLKAKTRERLLEIASEIIAIAAKREMVDGLSIAMEQGEMALFEADAGFTYTE
DQRRVIGEILSDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVRKGFQAILIAPTTLLCS
QHFKSLSTRFAKYNIKVAQLDRFTSPAQKQVILKELKSGELHVCVGTHSLFEVELHNPAL
VVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQYSQLLTPPNDRED
VRTFVKEYDEKVIKEAIIREMRRGGQVFFVHNRIATIEAKRKELLSMMPNLRILTLHSEI
SAAITEKEMLHFEEKAYDVLLSTSIIESGIHIPNVNTILIDSADHFGMADLHQLRGRVGR
SKRQGFCYFLVKDKEELSESAKKRLIALESNSYLGSGSILAYHDLEIRGGGNLVGEAQSG
HIKNIGYSLYLKMLEDAINSLLGKTPIASREVEIKLSISAFISDNDIAEDRVRLELYRRL
SRCASVHDVLEIEEEMVDRFGKLDVSTKQFLQLIEIKILATQQNIVLISNYGQNITIKYE
DEKKIMLQSRSRDDDDIIATVLLHLRTKA
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagctgcgtgttatgaatttttacaaactaaaaatgaccttcaacttttaggt
gtcaaaggtgaaaaggaggctttcctagcttctgaagtagccctttttttgggtaaaaaa
agttatgttttacctgatttgcgggcaaatagtggtgatgatctcctctctttccatgag
gaaattgtggagcttttacgtgttttgcaagcattttataaagacaactctcctaaaaag
attttaattgctcccttgcggacactcttaacgccacttcccaaagccgaactttttgac
accttaagtcttgagtttggtatgcgcttacatttggaacattttaaagagcaaatgttc
tactggggctatcttgctgtggatgtagtacaagacaaaggtgaaatctctgtacggggt
gatattattgatatttttccaccggacagtgagaaagcacttcgtttaagtctttttgat
gatgaagtggaaagtattcgtttctttgattgcgaaagccaaaagagcgccaaagaggag
ttggaaagctatacacttttcccagccctttttgcactcgatgaagaacgtcacacgctg
atgcaaaaacgcatagactctcttaagagcgatagctttacgaaagatatacactcgctt
ggtttgtggattttgggggagagtggagccgtttatacggaagcatttaaaacctatttg
agtatggatgcggtagcagaacttgaagaaatagcactttttgatgaggtgggtgccaaa
aaattacaaagccttccatcgatttctgaagcaaaagcttacagggaaattgcacccagt
aacatcaaaacttttttagagttgcatcaaaataaaaaaataacgctcttagcaaaaaat
gaagttttactgcgtatcgtagatatagaacctttacatgtaaagtggattcagagtgag
cgtatcgttaacatcatgaacgcggaagagattattctctcgctcaacaagccctctacg
aaaatcaaacgtaagcgtgccaacattgttctggatgaacttaaaaatggtgattatgtc
gtacatgaaaactatggaattggtatttttaaagggcttacgcaagtcactgttttaggg
gctactaaagattttgtactgatagagtatttgggtgacgataagcttttactccccgtt
gaaaatttacatgtcatcgatcgttacattggcgaaagcggtggtttggtcagcgtggat
cgccttggaaaagggagtttccaaaaactcaaagccaaaaccagagagcgacttttagag
attgccagtgagatcattgccattgcggctaaacgtgagatggtggatgggctcagcatt
gctatggaacagggtgaaatggcattgtttgaagccgatgcaggctttacgtataccgaa
gatcaacgacgggttattggcgaaattttgagtgatttcaaaagcggtaagatgatggac
agactgctcagtggtgatgtcggttttggtaagacagaagtggcgatgaatgcaatattt
gcgacggtacgaaaaggctttcaggcgatcttaattgcacctaccacacttttatgttcg
cagcattttaaaagcctttcaacccgttttgccaagtacaacatcaaagtagcgcaattg
gatcgttttacttctcccgctcaaaagcaggtgattttaaaagagctcaaaagtggcgag
ttgcacgtttgcgtaggaacgcactctttgtttgaagtagaactacacaatcctgcgctt
gtggtggtggatgaagagcataaatttggtgtcaaacaaaaagagaagcttaaaaacttc
cgtgaaaatgtccacattctctccatgagtgccacgcccattccaagaagtctcaatatg
gcactgagttctattaagcagtattcacagcttttaacaccacctaatgatcgagaagat
gtgcgaacgtttgtgaaagagtatgatgaaaaggttatcaaagaggcaattattcgggag
atgagacgaggtgggcaggtcttttttgtccacaaccgtattgcaaccattgaagctaaa
cgcaaagaattgctctctatgatgcctaatctgcgcattctcacacttcattcagaaatc
agtgcggctatcaccgaaaaagagatgttgcattttgaagagaaagcgtatgatgtactg
ttaagtacctccatcatcgaatcaggtattcatattcccaatgtcaatacgattcttatc
gactcagccgatcactttggtatggcagatctgcaccaacttcgtggtcgcgtagggcgt
agtaagcgccaaggcttttgttactttttggtgaaagataaagaagaactctcggaatct
gccaaaaaacgtctgatcgcactggaatccaattcgtatctgggcagcggttccatcctt
gcctaccatgaccttgaaatcagaggtggcggtaacttggtgggtgaagcacaaagtggg
catatcaaaaatattgggtattccctctatcttaaaatgcttgaagatgcgatcaattcg
cttttgggtaaaacaccgattgcttcacgagaggttgagattaagctttccattagtgca
ttcattagcgacaatgacatcgcagaagatcgtgtacgactcgaattatacagacgtttg
agccgttgtgcgagtgtgcatgatgttttagaaatcgaagaagaaatggtggatcgtttt
ggcaaacttgatgtttcgacaaagcagttcttgcaactgattgagattaaaattttagcg
acacaacaaaacattgtccttatctctaattacgggcaaaatattacgatcaaatacgaa
gatgagaaaaaaatcatgttgcaatcacgcagtcgggatgatgacgatatcattgctacc
gtgttgcttcaccttaggacgaaggcatga
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