Sulfurospirillum diekertiae JPD-1: SJPD1_2311
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Entry
SJPD1_2311 CDS
T05109
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sulj
Sulfurospirillum diekertiae JPD-1
Pathway
sulj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJPD1_2311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulj03019
]
SJPD1_2311
Enzymes [BR:
sulj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJPD1_2311
Messenger RNA biogenesis [BR:
sulj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJPD1_2311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
NAD_binding_3
Cas3-like_C_2
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
ATB70407
UniProt:
A0A290HG51
LinkDB
All DBs
Position
2241502..2242749
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AA seq
415 aa
AA seq
DB search
MLFSQLNLSAPLLKAIQDEGYTTPTPVQEKAIPPILEGRDMLAGAQTGTGKTAGFTLPIL
ELLSAKPRNKVKPVLRVLILTPTRELAAQVQESVKAYGKYLPFKSAVIFGGVGINPQIQI
LRAGIDILVATPGRLLDHVSQGTIDLKHIETFVLDEADRMLDMGFVKDIRRVIALLPAKR
QNLLFSATYSDDIKKLCESILKNPVIVEVARRNTSSELVKQRVIMVDCKRKTALLAKLIQ
ENKWEQILVFTRTKHHANKVSEYLAKIGINSAAIHGNKSQGARTKALADFKNGTVKVLVA
TDIAARGLDIDQLPYVVNLELPNIAEDYVHRIGRTGRAGNNGEAISLVCIDEHEYLRGIE
KLVNKKFEREIVEGFEPNPEIKAEPIQQGRGSKPQGQPRRRDNAPREYVEKRRNR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcacaactcaatcttagtgcccctcttttaaaagccattcaagatgaaggc
tatacaaccccaacacccgttcaagaaaaagcgattccgcctattttagaaggtcgcgat
atgcttgctggtgcgcaaacaggaacaggaaaaacggcgggttttacccttccaatttta
gagcttctctctgccaaaccacgtaacaaagtcaaacccgttctacgcgtactgattctt
acacctacacgagagcttgcggcacaagtgcaagagagcgttaaagcgtatggcaaatac
cttccctttaaaagcgcggtgatctttggaggcgtgggcatcaaccctcaaattcagata
ctccgcgcgggtattgatattcttgttgcaacaccgggtcgtttgttggaccatgtgtct
caagggactatcgatcttaaacatattgaaacatttgtcttagatgaagccgatcgtatg
ttagacatgggctttgtgaaagatattcgccgtgtcattgccctgcttccagccaaacgc
caaaacttgcttttttcagccacctactccgatgacattaaaaaactctgtgaatccatc
ttaaaaaatcccgtcatcgtcgaagtggcacgtcgtaatacctccagtgaattagtcaaa
cagcgcgtcattatggtcgattgtaagcgtaaaactgccttactcgctaagctgattcaa
gaaaacaaatgggaacaaattttggtctttacacgcaccaaacaccatgccaacaaagtt
tctgagtaccttgcgaagattggtatcaactctgctgccattcatggcaataaaagtcaa
ggtgccagaaccaaagcgctcgcggattttaaaaatggcaccgttaaagtgcttgtggca
accgatattgccgcacgaggattggacatcgaccaacttccttatgttgtcaatcttgaa
cttccaaacattgcagaagactacgttcaccgaattgggcgaacagggcgtgctggcaac
aatggtgaagccatttccttggtgtgtatagatgaacatgagtatttacgaggcattgaa
aagctcgtcaacaaaaagtttgaacgcgaaatcgttgagggatttgaaccgaatcctgag
attaaagcagagcctattcagcaaggtcgtgggagtaaaccacaaggtcaaccacgccgt
agagacaatgcgcctcgtgaatacgttgaaaaaagaagaaacaggtaa
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