Sulfurospirillum diekertiae JPD-1: SJPD1_2621
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Entry
SJPD1_2621 CDS
T05109
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sulj
Sulfurospirillum diekertiae JPD-1
Pathway
sulj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJPD1_2621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulj03019
]
SJPD1_2621
03009 Ribosome biogenesis [BR:
sulj03009
]
SJPD1_2621
Enzymes [BR:
sulj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJPD1_2621
Messenger RNA biogenesis [BR:
sulj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJPD1_2621
Ribosome biogenesis [BR:
sulj03009
]
Prokaryotic type
rRNA helicases
SJPD1_2621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SecA_DEAD
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATB70715
UniProt:
A0A290HH38
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All DBs
Position
2532022..2533812
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AA seq
596 aa
AA seq
DB search
MENNTTTFESFGLNPEILKAVVEAGFTEPSPVQVEAIPLVLAGNDIVAQAQTGTGKTAAF
GLPTLSMLDQHLNKVQLLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGL
IEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKER
QTLLFSATMPDPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLL
DALEPEKSIVFCRTKKEVDRLSTQLMAVGHAAKGLHGDMEQNQRESVIKAFRSSQIEILV
ATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRI
GKKVGSKIEHRIVPSLRDVKENKLVKIADDIKNAELNENASKLLSILEEEMDMSQIALKL
LSNLLKENTPVGPDKIGLDKKTLESVVKNIEERDGGRGGRSGGYRGNSGGGYRGSRDGGG
YRGNSSRDGGGYRGTSSTGSRDGGGYKGSNPRDGGSRDARPPRGDGVPRSDSRGESRNPF
AKEGSSSAPREGGYKGTRDSGDSRPPRAPRADRPSAPRSDAGRAPKAAPRNAYKKD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataacacaaccacatttgaatcatttggcttaaacccagagattcttaaagcc
gtcgtagaggctggctttacagaaccaagtcccgtacaagtcgaggcgatccctttagta
ctagcgggtaacgacatcgttgctcaagcacaaaccggtaccggtaaaacggccgctttt
ggtctcccaacactcagtatgctcgaccaacaccttaataaagtacaacttttagtcatt
acaccaacacgtgaacttgcaacgcaagtcagtgatgagctctactcactcggtcgtttt
tgcggtattaaaaccgttaccatctatggtggtagttcgtattcacgtcaaattggcttg
atcgaaaaaggtgcaagcgttatcgttgccacaccgggtcgtatgcttgatcttcttaaa
aatggcagacttccaggttttgctcctaagatggtcgttttagatgaagcggatgagatg
cttgatatgggctttttagaagacattgaagagatttttacttaccttcccaaagagcgt
caaaccctacttttttctgcaacgatgccagatcctatcaaacgtcttgctagcaaaatc
ttacatgagccaaaatttgtcagcattacgccaaaagatcacaccaccaatgaagacatt
gaacaactttactacgtgatcaacgagtatgagagagacgatgcaatgattcgtcttttg
gacgctttagagcctgaaaaatccatcgttttctgccgtaccaaaaaagaggttgacaga
ctttcaacccaactcatggcagtcggtcatgcagccaaagggttgcatggtgatatggaa
caaaatcaacgtgagagcgtgattaaagcattccgtagttcacaaatcgaaatccttgtg
gcaaccgatgttgcggcacgtggtttgaatgttgctgacatcagccacgtctttaactac
catatgccatttgatccagagagttatgttcaccgtatcggtagaaccggacgtgcgggc
aaaaagggtacagcaattaccttggtaaccccaatcgaatttcactccatgcaacgtatc
ggtaaaaaagtcggttctaaaatcgagcacagaattgttccaagtttacgtgatgtgaaa
gagaacaagctcgttaaaattgccgatgatattaaaaatgcagagcttaacgaaaatgca
agcaaactactttcgattcttgaagaagagatggatatgtcgcaaatcgcgcttaaactg
ctctcaaatcttctcaaagagaacactccagtcggtcctgataaaatcggtttagataaa
aagaccttagagtctgtcgttaaaaacatcgaagagcgtgatggtggtcgtggcggcaga
agtggcggttacagaggaaactctggcggcggttacagaggctcacgtgatggtggcggt
tatagaggaaactcttcacgtgacggcggtggctatcgaggtacatcatccacaggttct
cgtgatggtggcggctacaaaggttctaacccacgtgatggcggaagcagagatgctcgc
cctccacgaggtgatggtgttcctagaagtgatagcagaggcgaaagccgtaaccctttt
gcgaaagagggaagcagttcagcaccacgcgaaggcggatacaaaggaactcgtgatagc
ggcgatagcagaccaccacgcgcgccaagagccgatagacccagtgctccacgctctgat
gcaggacgcgctcccaaagccgctccaagaaacgcatacaaaaaagactaa
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