Sulfitobacter sp. DSM 110093: DSM110093_00475
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Entry
DSM110093_00475 CDS
T11886
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sulm Sulfitobacter sp. DSM 110093
Pathway
sulm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM110093_00475 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulm03019
]
DSM110093_00475 (pnp)
03016 Transfer RNA biogenesis [BR:
sulm03016
]
DSM110093_00475 (pnp)
Enzymes [BR:
sulm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DSM110093_00475 (pnp)
Messenger RNA biogenesis [BR:
sulm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSM110093_00475 (pnp)
Transfer RNA biogenesis [BR:
sulm03016
]
Prokaryotic type
tRNA degradation factors
DSM110093_00475 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
DUF8158
Motif
Other DBs
NCBI-ProteinID:
UOA30722
LinkDB
All DBs
Position
complement(484420..486552)
Genome browser
AA seq
710 aa
AA seq
DB search
MFNVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTYARQQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFMGPIAGCRVGYEDGDYILNPTIDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ
PDDYSDLSAAVKAAGEDEMRAAFAIADKQERTAAVAGARETIKGKLTDEQLEDKNLGSAM
KGLEASILRGDVVKTGKRIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGSYA
ILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMEKALAQAKEGRIHILGE
MNKALSGASDFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKI
ASANGDAIKKAYDMIYSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEVTKEEAEG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgtaacgaaaaaatcgatccagtggggcgaagagacgctgacactggaaacc
ggtaaggttgcccgtcaggcggacgggtcggtgattgccacgctgggtgaaaccagcgtt
atggccaacgtgacgtatgcgcgtcagcaaaagccgggccaggacttcttccccctgacc
gtgcactaccaagagaaatactatgccgccggtaaagtaccgggtggcttcttcaagcgt
gaggcccgccccaccgagaaagaaaccctgaccgcgcgtctgatcgaccgtccgatccgc
ccgctctttgtccccggcttcaaaaacgaagttctggtgatgtgtaccgtgctgagccac
gatctggtgaacgaccccgatatggtcgccatgatcgccgcctccgccgcattgaccatc
tccggcgcgcccttcatgggtccgatcgcgggctgccgcgtgggctatgaggatggcgat
tacatcctgaacccaacaatcgacgacatgcaggacctgcgcctgaaccccgagcagcgc
ctcgatctggttgtcgccggcaccaaagacgccgtgatgatggtcgaatccgaagcctat
gagctgtcggaagaggaaatgctgggtgcggtgaaattcgcacacgagcagatccagccg
gtcatcgacctgatcatcgatctggccgaagacgcagcgaaagagccgttcgacttccag
ccggacgattactcggacctgtccgccgctgttaaagccgctggtgaagacgaaatgcgc
gctgcattcgccatcgccgacaagcaagagcgcaccgccgctgttgccggtgcccgcgag
acgatcaaaggcaagctcaccgacgagcagcttgaggacaagaacctcggctccgcgatg
aagggccttgaggccagcatcctgcgcggtgacgtggtgaaaaccggcaagcgtatcgac
ggccgtcgcaccgacgaaatccgcgacatcgtggccgaaaccggcatcctgccgcggacc
cacggttcggcgctcttcacccgtggtgaaacgcaaggtttggttgtgaccacgctcggc
accggcgacgatgagcaattcatcgacgcgctgcacggcaacttcaaatcgaacttcctg
ctgcactataacttccccccctactcggttggtgaagttggtcgcgtgggccctcccggc
cgtcgtgaagttggccacggcaagctcgcatggcgtgccctgcaggcggttctgcccgca
gcgacagacttcccctataccatccgcctcgtgtctgagatcaccgaatccaacggttcg
tcctccatggcatccgtctgcggtggttcgctttcgatgatggacgcaggcgttccgctg
aaatcggctgtggccggtgttgcgatgggtctgatccttgaagatgacggctcctacgca
atcctgtcggacattctgggtgacgaagaccacctcggcgacatggacttcaaggttgct
ggtaccgaagcgggcatcacgtcgctgcagatggatatcaaggtcgcaggcatcacgccc
gagatcatggaaaaagccctggctcaggccaaagaaggccgtatccacatcctcggcgag
atgaacaaagcgctttccggtgcttctgacttctctgtccacgcaccacgcatcgagacc
atgcagatccccaccgacaagatccgtgaagtgatcggttccggcggtaaggtgatccgc
gagatcgtcgaagtctccggcgccaaggtcgacatcaacgacgaaggcatcatcaagatc
gctagtgccaacggcgacgccatcaaaaaggcctatgacatgatctattcgatcgtggca
gagcccgaagaaggcgcggtctacaccggcaccgtggtcaagatcgtcgatttcggcgct
ttcgtgaacttctttggcaagcgcgacggtctggttcacgtgtcccagatcgaaaaccgc
cgcctaaaccacccttcggacgttctgaaggaaggtcaggaagtgaaagtgaagcttttg
ggctttgacgatcgcggcaaggtgcgcctgtcgatgaaagtcgtcgatcaggaaactggt
gaagaagtaacgaaagaagaagccgaaggctaa
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integrated database retrieval system
