KEGG   Sulfolobus sp. E11-6: GFS33_02485
Entry
GFS33_02485       CDS       T07647                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sulo  Sulfolobus sp. E11-6
Pathway
sulo03030  DNA replication
sulo03410  Base excision repair
sulo03420  Nucleotide excision repair
sulo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sulo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GFS33_02485
   03410 Base excision repair
    GFS33_02485
   03420 Nucleotide excision repair
    GFS33_02485
   03430 Mismatch repair
    GFS33_02485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sulo03032]
    GFS33_02485
   03400 DNA repair and recombination proteins [BR:sulo03400]
    GFS33_02485
Enzymes [BR:sulo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GFS33_02485
    6.5.1.6  DNA ligase (ATP or NAD+)
     GFS33_02485
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     GFS33_02485
DNA replication proteins [BR:sulo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    GFS33_02485
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     GFS33_02485
DNA repair and recombination proteins [BR:sulo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     GFS33_02485
   NER (nucleotide excision repair)
    Other NER factors
     GFS33_02485
   MMR (mismatch excision repair)
    Other MMR factors
     GFS33_02485
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QGA67829
LinkDB
Position
415952..417757
AA seq 601 aa
MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKAVIDKVVYIIQGKLWPDFLGYPELG
IGEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSNKESLT
VDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVL
DAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLAER
LSNPEEILKKVGGNALVDYKYDGERAQIHKKGDKIFIFSRRLENITSQYPDVVDYINRYV
EGKEFIIEGEIVAIDPESGEMRSFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDY
TTKPLEVRRKLLESIVKPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDA
IYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFE
SVCKVASGFSDEQLDELQKKLMEIKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISP
LHTCCQDVIEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPSIDES
V
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggagtttaaagttattgccgaatattttgataaattagagaagatatcctcaaggctc
caacttacagctttactagctgatcttttaagcaaaagcgataaggcagttatagataag
gtagtttatattatacaaggcaaattatggcctgattttttaggttatccagagcttgga
atcggagagaaattcttaataaaagcaattagtatagctacgaatacagatgaaaattca
gtagaaaatctctataagtcaataggtgatcttggagaagtagctcgaaggttaaaaagc
aagcagcaaagtacagggattttaggttttttgggtacttcaaataaagagagcttgacg
gtggatgaagtttactctacattatctaaggtagcattaacaactggagagggcagtaga
gatttaaagataagattactggctggcctattaaaaaaggcagatccattagaggctaag
ttcctagtcagatttgttgaaggtcgacttagagttggtataggagatgcaacagtctta
gatgctatggcaatagcttttggcggggggcagtccgcatcagaaatagttgaaagagcg
tataatctcagggcggatttaggaaacattgcaaaaattatagtagagaagggaattgaa
gcattaaagactctaaagccggaagtcggaataccaattaggccgatgctagctgaaaga
ttatcgaaccccgaagaaatattaaagaaagtaggtgggaatgcattagttgattataaa
tatgatggagagagggcgcaaatacacaaaaaaggagacaaaatttttatattttctaga
agattagagaacattacttcgcagtatccagatgtagtagactacattaacagatatgtt
gaaggcaaagagttcattatagaaggagaaatagtggctatagatccagaaagcggcgag
atgagatcatttcaagagttaatgcacagaaagagaaagtcagatatttatgaagcaatt
aaggaatatccagtaaacgtgtttctctttgatttaatgtattatgaagatgtagattat
actacaaagccgttggaagttaggagaaaattgttagaaagtattgtaaaaccaaacgat
tatgtaaaaatagctcaccatattcaagttaataatgtagaggatcttaaatccttcttc
tatcgagcaatatctgagggcggagagggagtgatggtgaaggcaattggaaaagatgca
atatatcaagccggtgctaggggttggttatggataaagcttaaacgtgactatcaaagc
gagatggctgatacagttgatctggtagttgttggtggtttctatgggaagggtaaaaga
ggcggtaagataagctcgctattaatggctgcatataatcctaagactgatactttcgaa
tctgtttgcaaggtggctagtggattttcagatgagcaacttgacgagttacaaaagaag
ttaatggaaataaagagggatataaagcatcctagagttaattctaagatggaaccagat
atatgggtagagccagtttatgtagcggaaataattggagcggagataacaatatctcct
ttacatacttgttgccaagacgtcatagaaaaggatgctggtttatctataagatttcct
cgatttataagatggagagatgataaaagtccagaagacgctacaacaactgatgagata
cttgaaatgtacaataagcagcctaagaagaaaatcgaatcgccatctatagatgagagc
gtttaa

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