KEGG   Sulfolobus sp. E11-6: GFS33_13320
Entry
GFS33_13320       CDS       T07647                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
sulo  Sulfolobus sp. E11-6
Pathway
sulo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sulo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GFS33_13320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sulo03019]
    GFS33_13320
Messenger RNA biogenesis [BR:sulo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     GFS33_13320
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     GFS33_13320
SSDB
Motif
Pfam: ECR1_N_2 RRP4_S1 KH_6 RRP40_S1 S1 KH_1 PIMT_C
Other DBs
NCBI-ProteinID: QGA69531
UniProt: A0A5Q0TU90
LinkDB
Position
2484484..2485227
AA seq 247 aa
MSQSQKIILQPRSIVVPGELLAEGEFQIPWSPYILKINSKYYSTVVGLFDVKDTQFEVIP
LEGSFYYPKVNDVVIGLIEDVEIYGWVVDIKAPYKAYLPASNLLGRSVNVGEDLRRYLDV
GDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETLTSKS
GCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGERNASS
GETKTNP
NT seq 744 nt   +upstreamnt  +downstreamnt
atgagtcagtctcagaaaattattttacagccaaggtcaatagtagtacctggcgagcta
ttagctgaaggcgaatttcagattccttggtctccctatatattaaagatcaatagtaaa
tattactccacagttgttggactttttgatgtaaaagatactcagtttgaagtgattcct
ttagaaggttcgttctactatcctaaggtcaacgatgtggtaataggtttgatagaggac
gttgagatctatggttgggtggttgacataaaagctccttataaggcatatttaccagcc
tcaaatcttttaggaaggtccgttaatgttggagaggatttaaggagatatttagacgtg
ggcgactatgttatagctagaattgaaaattttgataggtcaatagatcccgttttatca
gttaaaggtaaggacctaggtcgtgtcaataatgggatagtaattgatataatgccagtt
aaggttccgcgtgttataggaaagaataaaagtatgtatgagaccttgacctcaaaaagt
ggatgcagcatgtttgttgctaacaatggtaggatatgggctacttgtccttcccgcttt
tctgaagaaattttaattgaggcaattaggaagattgaaaatgagtcacatataaaagga
ttgacagatagaataaaacaattcattgaggaaaaattaggtgagagaaatgcttcaagt
ggagagaccaaaactaatccttga

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