Candidatus Sulfuricurvum sp. RIFRC-1: B649_02540
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Entry
B649_02540 CDS
T02537
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sulr
Candidatus Sulfuricurvum sp. RIFRC-1
Pathway
sulr03420
Nucleotide excision repair
sulr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sulr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B649_02540
03430 Mismatch repair
B649_02540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sulr03400
]
B649_02540
Enzymes [BR:
sulr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B649_02540
DNA repair and recombination proteins [BR:
sulr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B649_02540
MMR (mismatch excision repair)
Other MMR factors
B649_02540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
CarD_TRCF_RID
MKT1_N
eIF3_p135
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFV96822
LinkDB
All DBs
Position
complement(487282..489330)
Genome browser
AA seq
682 aa
AA seq
DB search
MDEILSNLNEAQRSAVERIDGPLLILAGAGSGKTKTITTRLAYLLDQVGIPAGNTLTLTF
TNKAAKEMRERAMGLIAQNSYPPLLCTFHKFGLLFLKFHIHLLGRANNFVVIDTDDKKKI
IKKINADLPTALIASEISRYKNSLIDPAEAYAQAELTNYKHIAKIYEEYEAYLLKNNLVD
FDDLLCLTYKLLNENPDLCTQTSEKYRYIMIDEYQDTNELQLRLLQKLCSTHNNLCVVGD
DDQSIYGWRGAHVRNILEFDQDFANTMVVKLEHNYRSTQPILTVANALIEHNRSRLGKTL
IATKEGGEAVQTITSNDESEESQKIAKTIKTLITQGVRPNEIAVLYRINALSRSLEEGLN
RAGVAYKLVGGLRFYDRAEIKDLISYLRVITNVHDNFSLKRIINKPKRGLGKATIDKIEL
SSIEAGKSMFEFISTLNESELESLVRKKSAGELRDFVSEILELRLVAEEAIYRFIDLLET
RFKIKETLKGLPDEAEKIANIDEFYGLFRDYVKQNPDASLAEFLNDITLQSEQDQVEGES
IYIMSIHASKGLEFEHLFVIGMEEGFLPLIGDGSDLEEERRLGYVAITRAKSNLTLSNVN
SRFYKGRRTDLQKSRFINEAGLCEGSLILEKNTSYKKGDLIRHKIFGAGRVEGVSKAGRE
FKLSINFGGNKRDILASFVEKL
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaattctctcaaatcttaatgaagcacaacgcagtgcggtggagcggattgac
ggtcctttgctcattttggcaggagcaggaagcggaaaaaccaaaaccattaccacacgc
cttgcgtatctgcttgatcaagtcggaattcccgcaggcaacacactcaccctcactttt
accaataaagcggccaaagagatgcgtgagcgggcgatgggacttatcgcccaaaattcc
tatccccctttgctttgtacctttcataaattcggcctcctttttctcaaatttcatatc
catttgctgggacgtgctaataattttgtagttatcgataccgatgacaaaaagaaaatc
attaaaaaaatcaatgctgatcttcccactgccctgatcgccagtgaaatttcccgctat
aagaattctctcatcgatcctgccgaagcgtacgcgcaagcggaacttacgaactacaag
cacattgctaaaatctatgaagagtatgaagcctatctgctcaaaaataatctcgtcgat
ttcgatgatttgctctgcctcacctataagctcctcaatgagaatcccgatctgtgtact
cagacatcggaaaaatatcgctatatcatgatcgacgaatatcaagacaccaatgaatta
caattacgattactccaaaaattgtgcagtactcacaacaatctctgcgtcgtaggggac
gatgatcagagtatctacggatggcggggggcgcatgtgcgaaatatccttgagttcgat
caggatttcgccaatacgatggtggtcaaattggagcacaactaccgatccacccagcct
attctcacggttgccaatgccctcatcgaacataaccgctcaagattgggtaaaacactc
atcgcaaccaaagaggggggagaggcggtccaaaccatcacctcgaatgatgagagcgaa
gagtcccaaaaaattgccaagacaatcaaaactcttatcacccaaggagtccgcccgaat
gaaatcgcggtactttatcggatcaatgccctcagccgttctctcgaagagggactaaac
cgcgccggtgtcgcttataagctcgtcggcggtttacgtttctatgaccgtgccgagatc
aaagatctcatcagttatctgcgtgtcatcaccaacgttcatgataatttctctctcaag
cggattatcaataaacctaaacggggtctgggaaaagcgacgattgataaaattgagctc
tcttccatcgaagcgggtaaatcgatgtttgaatttatctctaccctcaatgagagtgag
ctcgaatcgcttgtacggaaaaaaagtgccggggagctgcgtgatttcgtctccgaaatt
cttgaacttcgtctcgttgcagaagaggcaatttaccgttttatcgatctgcttgaaaca
cgttttaaaatcaaagagaccctaaaagggctcccggacgaagccgaaaaaatagccaat
atcgatgaattttacggtctctttcgtgattatgtcaaacaaaatcctgacgcttcattg
gctgagtttctcaacgacatcaccttgcaaagcgaacaagatcaagtggagggcgagagt
atctatatcatgagtatccacgcttccaaagggctggaattcgagcacctattcgttatc
ggtatggaggagggatttttaccgcttatcggcgatgggagtgatctcgaagaagaacgt
cgtctggggtatgttgctatcacccgtgccaaaagcaatcttaccctctccaatgtcaac
agccgcttttacaaaggacgccgtaccgatctgcaaaaaagccgcttcatcaacgaagcg
ggattatgcgaaggttccctgatcttggaaaaaaatacctcctataaaaaaggggactta
atacgccataaaatcttcggtgccggacgggtcgaaggggttagcaaagcgggacgcgag
tttaaactcagtatcaatttcggcggtaataaacgggatattcttgcctcattcgtggag
aaactttaa
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