Candidatus Sulfuricurvum sp. RIFRC-1: B649_04035
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Entry
B649_04035 CDS
T02537
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sulr
Candidatus Sulfuricurvum sp. RIFRC-1
Pathway
sulr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B649_04035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulr03019
]
B649_04035
Enzymes [BR:
sulr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B649_04035
Messenger RNA biogenesis [BR:
sulr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B649_04035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6047
Motif
Other DBs
NCBI-ProteinID:
AFV97121
LinkDB
All DBs
Position
793410..794699
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AA seq
429 aa
AA seq
DB search
MTFTDLKLNDSLLKAINDQGYTTPTPVQAQAIPYILEGRDMLAGAQTGTGKTAGFTLPML
QILSEQKMPKNHRKIRALILTPTRELAAQVADSVKIYGKYLPLKSAVIFGGVGINPQITM
LRNGIDILIATPGRLLDHVGQGTVDLSAVEVFVLDEADRMLDMGFIRDIRRVITILPKVR
QNLMFSATYSDEIKTLANTLLRNPAEVEVARRNTSSELVTQSVILVDCKRKSALLGELIG
KNKWEQVLVFTRTKHGANKLTEYLQKIGITAAAIHGNKSQAARTKALNDFKLSSVRVLVA
TDIAARGIDIDALPHVVNFELPNIAEDYVHRIGRTGRAGCEGEALSLVCVDESDYLRGIE
KLINKKLPSRIVEGYEPDPSIKAEPIQRGRGGGGGNRGGNSGGDRSGKPAQKRDGGRHEP
KKRNYDGRR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgactttcaccgatttaaaactaaatgactcgttgctcaaagcaatcaatgaccaaggc
tatactacccctacgcccgttcaggcacaagcgatcccttatatcttagaagggcgtgat
atgctcgcaggggctcaaaccggtaccggcaaaaccgctggctttaccctcccgatgctc
caaatcctcagtgagcaaaaaatgccgaaaaatcatcgtaaaatccgtgctcttatcctt
acgccaacacgtgagcttgcggcacaagtggcggatagtgtcaaaatctacggtaaatat
ctccccctcaaaagtgccgttattttcggcggggtggggattaatcctcaaattacgatg
ctcagaaacggaatcgacattcttatcgctactccgggacgtttactcgatcacgtaggg
caggggacagttgatttgagcgcggtagaagtttttgtccttgatgaagcggatcgtatg
ctcgatatgggatttattcgcgatattcgccgtgttatcaccatactgccgaaagtgcgt
caaaaccttatgttctctgcgacctattcggatgagattaaaacattggcaaataccttg
ttgcgcaatccggctgaagtcgaagtagcacgccgcaacacctccagcgagcttgtaacc
caaagtgtaatcttagtcgattgcaaacgtaaaagtgcccttttgggagagctcatcggc
aaaaataaatgggaacaggttctcgtctttacccgcaccaaacacggagccaacaaactc
accgagtatcttcaaaagatcggtattactgccgccgcgatccacggtaataaaagtcaa
gccgcacgtacaaaagcgttgaatgattttaaacttagctcggttagagtcctggtcgcc
accgatatcgccgcgcgcggtatcgatatcgatgcactcccgcatgtggtaaattttgag
cttcctaatatcgccgaggattacgttcaccgtattggacgaacagggcgtgcaggatgc
gagggagaagcactttcactggtatgtgtcgatgaatccgattatctgcgcggcatcgaa
aaattgatcaataaaaagcttccatcccgtatcgtagaagggtacgaacctgatccttct
atcaaagccgaaccgattcaacgcggccgtggcggcggaggcggaaaccgtggcgggaat
agcggcggtgatcgcagcggcaaaccggcacaaaaacgtgacggtggacgccatgagcct
aaaaaacgtaattatgacggacgtcgctaa
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