KEGG   Candidatus Sulfuricurvum sp. RIFRC-1: B649_07350
Entry
B649_07350        CDS       T02537                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
sulr  Candidatus Sulfuricurvum sp. RIFRC-1
Pathway
sulr02020  Two-component system
sulr02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:sulr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    B649_07350
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    B649_07350
  09142 Cell motility
   02040 Flagellar assembly
    B649_07350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sulr03021]
    B649_07350
Transcription machinery [BR:sulr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     B649_07350
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: AFV97782
LinkDB
Position
complement(1469215..1470480)
AA seq 421 aa
MLRVKTSVELKNKLSNTLRNWLPILQSSLSDLGEAMAPFVEGNPLIDVKSGYEESFEARI
PKKIQFGYVQNSHSEAIEALTIQHKSLYEVLEEQIDSSLFPTPISRLIATHIIENLDEGG
YYEGESEVFCAQNALTMEQFEKIRLRFIHVEPVGIGARNVSESFLFQLDSSSISDSGYTL
ASDMINHLDELGRYRKEPFFDEAMRVIGSFKNPPAIDYMEDSMQVIPDLMIYTDPEEGIE
VKLNDQYYPSISIDAAYGVDHTFVRDKLKEAKSLVDALEMRKATLYKVGLMIVEYQYDFF
TGGAIKPLTLKTLADEFGHNPSTISRAIANKYIACNRGIYPMKEFFTTAIDEDVSNAAIK
EYVSELVKNESHKKPLSDMKLLEMIQEKFKITMVRRTIAKYRKQLNIAGSSERKQLYLLG
R
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgttacgggtaaaaaccagcgtcgagctcaaaaacaagctttctaacactcttcgtaac
tggctgccgattttgcagtcgagtctcagtgatctgggtgaagcgatggctccgtttgtt
gagggaaaccctctgattgatgtcaaatcgggatatgaggagtcttttgaagcaagaatc
ccgaaaaaaattcaatttggctatgttcagaactctcacagcgaagcgattgaagcactc
acaatccagcacaagagtttgtatgaagtgctcgaagagcagatagacagctctttattt
cccacgccgatttctcgtcttattgctacccatatcatcgaaaatctcgacgaaggggga
tattatgagggggaatcggaagttttttgtgctcaaaacgctctgacgatggaacaattt
gaaaaaatccgtctccgttttatccatgtagaaccggtcggtatcggcgcacgaaatgtg
agtgaatcttttttatttcaactggattcctcgtcaatcagtgattcgggatacacccta
gcatcggatatgatcaatcatctcgatgaattagggcgctaccgaaaagagccgtttttt
gacgaagcgatgcgggttatcgggagttttaaaaatcctccggcaatcgattacatggag
gactcaatgcaggttatccccgatttgatgatctatacggatccagaagagggaatcgaa
gtaaaattgaacgatcaatattatccctcaatttccatcgatgcagcgtacggagtcgat
catacttttgttcgtgacaagctcaaagaggccaaaagtcttgtggatgcgttagagatg
cgtaaagcgaccttgtacaaagtagggctgatgatcgttgaatatcagtatgatttcttt
acgggaggggcgattaaaccgctaacccttaaaacgctggcggatgagttcggtcataac
ccttctactatttctcgtgcgattgccaacaaatatattgcgtgtaatcgtggtatttat
ccgatgaaagagtttttcacgacagcgatcgatgaagatgtctccaatgccgcaattaaa
gagtatgtctctgaattggtcaaaaatgagtcgcataaaaaaccgctcagtgatatgaaa
ctgcttgagatgatccaagaaaaattcaagattacgatggttcgccgaacgatcgctaaa
taccgtaaacagctcaatatcgcgggatcaagtgaacgtaaacaactttatctgctaggg
cgctag

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