Sulfurospirillum diekertiae SL2-1: Sdiek1_0553
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Entry
Sdiek1_0553 CDS
T04910
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
suls
Sulfurospirillum diekertiae SL2-1
Pathway
suls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sdiek1_0553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suls03021
]
Sdiek1_0553
03019 Messenger RNA biogenesis [BR:
suls03019
]
Sdiek1_0553
Transcription machinery [BR:
suls03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Sdiek1_0553
Messenger RNA biogenesis [BR:
suls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sdiek1_0553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Mor
S1CSD-TOTE-2
AAA_25
OB_RNB
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ARU47729
UniProt:
A0A1Y0HI01
LinkDB
All DBs
Position
complement(528002..529417)
Genome browser
AA seq
471 aa
AA seq
DB search
MNDQTNNKEGTMSGNTPTSNNQPCANTTQPNGNTNGNVQAKPTHYNKSRTHIPVDGYKIE
GLRTTPLEKLLEIAAELGIENPNELKRQDLMFEILKSQVNQGGFILFTGILEIAGEGYGF
LRATDANFSDSANDAYVSSTQVKKFALRTGDIVTGQVRPPKDQERYYALLKIEAINYLPL
VESKKRPLFENLTPLYPTEKIKLEYDPMKITGRVLDLFTPIGKGQRGLIVAPPRSGKTEL
MKELAHGIARNHPESELIVLLVDERPEEVTDMQRCVQGEVYSSTFDMPASNHVRVANLVI
EKAKRRVEMGKDVIILLDSITRLARAYNTVTPSSGKVLSGGVDANALHKPKRFFGAARNI
ENGGSLTIISTALIETGSRMDEVIFEEFKGTGNSEIVLDRNISDRRIYPAINIMKSGTRK
EELLLTPDRLQKIWALRSAISQMDDIEALKFLYAKMLKTKDNEELLSIMND
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcaaactaacaacaaagaaggcacaatgagcggaaacactcccacctcaaac
aatcaaccctgcgcgaatacaacccaacccaacggtaatacaaatggaaacgtacaagca
aaaccaacacactataacaaatcacgaacccatattcccgtagatggctacaaaattgag
ggtctaagaacgacgccacttgaaaaacttttagagattgctgctgaacttggcattgaa
aaccccaatgaacttaaacgtcaagatttaatgtttgagatcttaaaatctcaagtcaac
caaggtggattcattctgtttacgggtattttagagattgcgggtgaagggtatggtttc
ctacgtgctacggatgccaacttctccgacagcgccaacgatgcctacgttagcagtacc
caagttaaaaaatttgcgcttcgtaccggtgacatcgttacaggacaagtgagacctccc
aaagatcaagagcgttactacgcccttcttaaaattgaagccatcaactatcttcctctt
gtagagagcaaaaaacgccctctttttgaaaacctaacacccctttacccaactgaaaaa
atcaaacttgaatacgatccaatgaaaatcaccggtcgtgtactggatctttttacccca
atcggtaaaggtcaacgtgggttgatcgttgcccctccaagaagtggtaaaaccgaactt
atgaaagagcttgctcatggcatcgcacgtaaccacccagaatctgaactcattgttctg
cttgtcgatgagagacctgaagaggtgaccgacatgcaacgctgtgttcaaggtgaggtc
tatagctctacgtttgatatgccagcatccaatcatgttcgtgtcgccaaccttgtcatt
gaaaaagctaaacgtcgcgttgagatgggcaaagatgtcattatccttttagactcgatc
acccgtcttgcacgtgcttacaataccgttactccttcaagtggtaaagttttaagtggt
ggtgtcgatgccaacgcattgcataaaccaaaacgtttctttggtgctgcaagaaatatt
gaaaatggcggcagtttgacgattatttcaaccgcattgattgagacaggtagtcgaatg
gatgaagttatctttgaagagttcaaaggtaccggtaacagcgaaattgttcttgataga
aatatctcagatcgaagaatctacccagcgattaacatcatgaaatcaggaacacgtaaa
gaagagcttcttcttactcctgatcgtcttcaaaaaatctgggctcttagaagcgctatc
agccaaatggatgacattgaagcacttaaattcttgtatgcaaaaatgcttaaaaccaag
gacaatgaagaactactctctattatgaatgactag
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