Sulfurospirillum diekertiae SL2-1: Sdiek1_2002
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Entry
Sdiek1_2002 CDS
T04910
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
suls
Sulfurospirillum diekertiae SL2-1
Pathway
suls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sdiek1_2002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suls03019
]
Sdiek1_2002
03400 DNA repair and recombination proteins [BR:
suls03400
]
Sdiek1_2002
Enzymes [BR:
suls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sdiek1_2002
Messenger RNA biogenesis [BR:
suls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sdiek1_2002
DNA repair and recombination proteins [BR:
suls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sdiek1_2002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
AAA_30
DUF1972
Motif
Other DBs
NCBI-ProteinID:
ARU49161
UniProt:
A0A1Y0HM42
LinkDB
All DBs
Position
complement(1933922..1935709)
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AA seq
595 aa
AA seq
DB search
MTEPYRILHSVFGHHSFRAYQEEAVNAILAHKDLMMILPTGAGKSLCYQLPSLVMDGMSV
VISPLLALMHDQITALSTFGIKASMISSMQSPQEIQETMHACRKGELKLLYVAPERLKGE
SFFKLFTNPSYQFFVIDEAHCVSEWGHEFREDYRQLFRLKLYFPQTPIAAFTATATKIVE
HDILHQLSLSNPLIIRAKVERDNLTIKADYRNANGREQLLTFLSAFEHESGIIYTLSRKE
TESLAQFLNTRKILARAYHAGLPTEEKNETFRAFLNDEIQVVVATIAFGMGIDKSNIRFV
VHMSLPKTIENYYQEIGRSGRDGLPSSTLLLFSNSDIVEHKRRIGEQPASEYQKVAYEKL
DAMAKYASSQVCRHQHIASYFDDTILTCKTRCDNCIDGEKQSIDISHEALKLLSSVYRTG
QRFGLQYVVDVLMGSTNEKIVQNGHQSLSVFGIGKDRTKAQWLSIGDRLMELDAFKVGEY
RVISLSEYGAKIIRERLSVSIHAKRLEERQKVKKTKKVLLGTFELSIFEKLRALRSEIAK
ENGIPPYVVFSDKTLKEMAEKLPHDKESMLDISGVGEVKFERYGEAFLELCVTLS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagccataccgcattcttcacagtgtctttgggcatcacagttttagagcctat
caagaagaggcagtcaatgccattttagcgcacaaagaccttatgatgatcttgccaaca
ggggctggaaagtctttgtgctatcagcttccctctttggtgatggacggcatgagcgtg
gtgatttcgccactgctcgcgttgatgcacgaccaaatcaccgcactttccacctttggc
attaaagcttctatgatctcttcgatgcagtcaccccaagaaattcaagagacgatgcac
gcgtgtcgtaagggtgagctcaagcttttgtatgttgcccctgagcgcttaaaaggggag
tcgttttttaaactttttacaaacccttcctatcaattttttgtcatcgacgaagcgcac
tgtgtaagtgagtgggggcatgaatttagggaagattaccgccaactctttcgcctcaaa
ctctattttccacagactcccattgctgcttttacggcgacggcgacgaagatcgttgag
catgatattctgcatcagctcagtctctccaaccctcttatcattcgtgccaaagtggaa
agagacaatctcacgatcaaagcggactaccgcaacgccaacggacgcgaacaacttctt
acgtttttgagtgcctttgaacacgagagcggtatcatttacacacttagccgcaaagag
accgaaagtctagcgcagtttttaaacactcgcaaaatcctcgcgcgcgcttaccatgcg
ggacttccgaccgaagagaaaaatgagacctttcgcgcttttttaaacgatgagattcag
gtcgttgtagccactatcgcctttggtatgggcatcgataagagcaacattcgttttgtg
gtgcatatgtcactgcctaaaaccatcgaaaactactaccaagagattgggcgctccggc
cgtgatggcttgccttcttcgacgctgcttcttttttccaactccgacatcgtggagcat
aaacgccgcatcggtgaacagcctgcatctgagtaccaaaaagtggcatatgaaaaactg
gatgctatggcaaaatatgcctcatcgcaagtctgccgccaccaacacattgcgagttat
tttgacgatacgattcttacatgtaaaacgcggtgcgataactgcatcgatggagaaaag
cagagtattgacatctcccatgaggcactgaagctgttatcgagtgtttaccgcacaggg
cagcgttttggactgcaatatgtcgtagatgtgttaatgggctccaccaatgaaaaaatc
gtgcaaaacgggcaccaaagcctctctgtgtttggcattggcaaagatagaaccaaagcg
caatggctaagtattggcgacaggctgatggaactagatgcttttaaggtcggggaatac
cgtgtcataagcctcagtgaatacggtgctaaaattattagagagcgtttatcggtgagc
attcatgccaagcgtttggaagagcgacaaaaagttaaaaaaactaaaaaagttctgtta
ggaacgtttgagctctccatttttgagaagttgcgcgctttgcgatccgaaattgccaaa
gaaaatggcattccgccgtatgtcgtctttagtgataagactcttaaagagatggcagag
aaactaccgcacgataaagagtcgatgctcgatatcagtggtgtgggcgaagtgaagttt
gagcgctatggcgaagcctttttggagctgtgcgttacactttcgtag
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