Sulfurospirillum diekertiae SL2-1: Sdiek1_2078
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Entry
Sdiek1_2078 CDS
T04910
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
suls
Sulfurospirillum diekertiae SL2-1
Pathway
suls03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
suls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sdiek1_2078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suls03400
]
Sdiek1_2078
Enzymes [BR:
suls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sdiek1_2078
DNA repair and recombination proteins [BR:
suls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sdiek1_2078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_30
Cas3-like_C_2
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ARU49237
UniProt:
A0A1Y0HM90
LinkDB
All DBs
Position
complement(2002730..2005699)
Genome browser
AA seq
989 aa
AA seq
DB search
MLQAACYEFLQTKNDLQLLGVKGEKEAFLASEVALLLGKKSYVLPDLRANRGDDLLSFHE
EIVELLRVLQAFYKDNSTKKILIAPLRTLLTPLPKAELFNTLSLEFGMRLHLEHFKEQMF
YWGYLAVDVVQDKGEISVRGDIIDIFPPDSEKALRLSLFDDEVESIRFFDCESQKSAKEE
LESYTLFPALFALDEERHTLMQKRIDSLKSDSFTKDVHSLGLWVLGESGAVYTETFKTYL
SMDAVAELEEIALFDEDGAKSLQSLPSIPEAKSYREIAPSNIKTFLELHHTKKITLLAKN
EVLLRIVDIEPLHVKWIQSERIVNIMNAEEIILSLNKPSTKIKRKRANIVLDELKNGDYV
VHEHYGIGIFKGLTQVTVLGATKDFVLIEYLGDDKLLLPVENLHVIDRYIGESGGLVSVD
RLGKGSFQKLKAKTRERLLEIASEIIAIAAKREMVDGLSIAMEQGEMALFEADAGFTYTE
DQKRVIGEILSDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVRNGFQAILIAPTTLLCS
QHFKSLSTRFAKYNIKVAQLDRFTSPAQKQVILKELKSGELHVCVGTHSLFEVELHNPAL
VVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQYSQLLTPPNDRED
VRTFVKEYDEKVIKEAIIREMRRGGQIFFVHNRIATIEAKRKELLSMMPNLRILTLHSEI
SAAITEKEMLHFEEKAYDVLLSTSIIESGIHIPNVNTILIDSADHFGMADLHQLRGRVGR
SKRQGFCYFLVKDKEELSESAKKRLIALESNSYLGSGSILAYHDLEIRGGGNLVGEAQSG
HIKNIGYSLYLKMLEDAINSLLGKTPIASREVEIKLSISAFISDNDIAEDRVRLELYRRL
SRCGSVHDVLEIEEEMVDRFGKLDVSTKQFLQLIEIKILATQQNIVLISNYGQNITIKYE
DEKKIMLQSRSRDDDDIIATVLMHLRIKA
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagctgcgtgttatgaatttttacaaactaaaaatgaccttcaactcttaggt
gtcaaaggtgaaaaagaggcttttctagcatctgaagtagcccttttactgggtaaaaaa
agctatgttttacctgatttgcgagcaaatcgtggagatgatttgctctctttccatgaa
gaaattgtagagcttttacgtgttttgcaagcattttataaagataactcaactaaaaag
attttaattgctcctttgcggacacttttaacaccccttcccaaagccgaactttttaat
accttaagtcttgagtttggtatgcgtttgcatttggaacattttaaagagcagatgttc
tactggggctatcttgcggttgatgtggttcaagacaaaggtgagatctctgtacggggg
gatattattgacatttttccgccagacagtgagaaagcacttcgtttaagcctttttgat
gatgaagtcgaaagcattcgtttctttgactgtgaaagtcagaaaagtgccaaagaggag
ttagagagttatacccttttccctgcactttttgcactggatgaagaacgtcatacgctg
atgcaaaaacgcatagactctcttaaaagtgacagctttaccaaagatgttcattcactt
ggtctttgggttttaggggagagtggagccgtttacacggaaacatttaaaacgtattta
agtatggacgcggtagcggaactcgaagaaatagcactttttgatgaagacggtgcaaaa
agtttgcaaagccttccatccattcctgaggcaaaatcctacagagaaattgcacctagt
aatatcaaaacttttttagaattgcatcacactaaaaaaataacgctcttagcgaaaaat
gaagttttactgcgtatcgtagatatagaacctttacatgtaaagtggattcagagtgag
cgtatcgttaacatcatgaatgccgaagagattattctctctcttaataagccctctaca
aaaatcaaacgtaagcgtgccaatattgttctggatgaacttaaaaatggtgattatgtt
gtacatgaacactatggtattggtatctttaaggggctcacgcaggtgactgttttaggg
gctactaaagattttgtactgatagagtatttgggcgatgataaacttttactccccgtc
gaaaatttacatgtaatcgatcgctacattggtgagagcggtggcttggtcagtgtcgat
cgccttggaaaaggtagtttccaaaaactcaaagccaaaaccagagaacgacttttagaa
attgccagtgaaattattgccattgcggctaaacgtgagatggtagatggactgagtatc
gctatggaacaaggtgaaatggcgctgtttgaagccgatgcaggctttacgtatacggaa
gatcaaaagcgagttattggcgaaatcttgagtgatttcaagagtggcaagatgatggat
cgactcctcagtggcgatgtcggttttgggaagacagaagttgctatgaatgccattttt
gccacggttcgcaatggttttcaagccattttaattgcccctacgactcttttatgttcc
cagcattttaaaagcctctcaacccgttttgccaagtacaacatcaaagtagcgcaatta
gatcgttttacctctcccgctcaaaagcaggttattttaaaagagctcaaaagtggtgaa
ttgcatgtctgcgtggggacacactcactttttgaagtggaactgcacaatccagctctt
gtggtggtcgatgaagagcataaatttggtgtcaagcagaaagaaaaactcaaaaatttc
cgtgaaaacgtgcatattctctccatgagtgccacacctattcctcgaagtctcaatatg
gcgctcagttccattaagcaatattcacagcttttaacacctcctaatgatcgagaagat
gtgcgaacgtttgtcaaagagtacgatgaaaaagtcattaaagaggcgattattcgtgag
atgaggcgaggggggcagatcttttttgtccataatcgtattgcaaccattgaggctaaa
cgcaaagagctactctctatgatgcccaatcttcgcattctcacacttcactctgaaatc
agtgcggctatcacagaaaaagagatgctacactttgaagagaaggcatacgatgtgctt
ttaagtacctctattattgaatcaggtattcatatacccaatgtcaatacgattcttatc
gattcagccgatcactttggaatggcagatcttcaccaacttcgtggtcgtgtgggacgt
agtaagcgccaaggcttttgttattttttagtgaaagacaaagaagaactctctgagtca
gccaaaaaacgtcttatcgcactggaatccaattcgtatctgggtagtggttccatcctt
gcctaccatgaccttgaaatcagaggtggcggtaacttggtgggcgaagcacaaagtgga
catatcaagaacatagggtattcactctatcttaaaatgcttgaagatgcgatcaattca
cttctgggtaaaacaccgattgcttcacgtgaggttgagattaaactttctattagtgcg
tttattagcgataatgatatcgcagaagaccgtgtacgattagaattatacagacgttta
agtcgatgtggaagtgttcatgatgttttagaaatagaagaagagatggtggatcgtttt
gggaaactcgacgtttcgacaaagcagtttttacaactcatcgagattaaaattttagcg
acacaacagaacatagtcctgatatccaattatggacaaaatattacaatcaaatacgaa
gatgagaaaaaaatcatgttgcaatcacgcagtcgagatgatgacgatatcattgcaaca
gtgcttatgcatttaaggattaaagcgtga
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