Sulfurospirillum sp. 1612: SFB89_00205
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Entry
SFB89_00205 CDS
T11274
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sulu Sulfurospirillum sp. 1612
Pathway
sulu03410
Base excision repair
sulu03430
Mismatch repair
sulu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sulu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SFB89_00205 (recJ)
03430 Mismatch repair
SFB89_00205 (recJ)
03440 Homologous recombination
SFB89_00205 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sulu03400
]
SFB89_00205 (recJ)
DNA repair and recombination proteins [BR:
sulu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SFB89_00205 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SFB89_00205 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFB89_00205 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
FecR_C
Motif
Other DBs
NCBI-ProteinID:
WVV36463
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Position
42183..43757
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AA seq
524 aa
AA seq
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MINKLTKVDIQNILSKRFEKDECTKLEELPKPNCFKDMDKASSRIVSAIKNDEKIAIVGD
YDVDGVVSSVILSTFFDDIGVEYEAIIPNRFQDGYGLSLNIIKKLDATVIITVDNGISAV
DSAQYCKEHGIDLIITDHHSIPSIVPDAYAIVNPKQTDCQFPNCEICGAQVAWYLTASIK
GKLKIKYDLSSFLDILCIAIMADMMELKDMNRVMVKKGILALNRSKRPAFEAVKKFFSKK
TLESDEISFLIAPLINSSGRMEDAKFSYNFLKSQNIDDAMDRLEYIVSLNNSRKDEEKQL
FEASLSYVKEDENIIIAWGEDWHEGVLGIVASRLSKRFKKPAIVFSITDDKAKGSARGIG
ELDILALITLQQDILLGFGGHKGAAGVSLMADKLEEFRDRMYASTRDIEASTLNANHDVL
GEIEPSEIDFELLEILEEFEPYGQKNPKPNFILKDIAVKINKKIGKDQNHLKLILHDGVN
TLESIFFNFDKDAKVGEKIDILFTLSRNDYRGLVTPQLIIKEIL
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgataaataaactcaccaaggttgacattcaaaatatcttatctaagcggtttgaaaaa
gatgaatgtaccaaactagaggagttgccaaaacctaactgttttaaagatatggataaa
gcatcttcacggattgttagcgcaatcaaaaatgatgagaagattgccattgtgggagat
tatgacgtcgatggcgtcgtctcctcggttattttaagcacattttttgatgatattggt
gtggaatatgaagcgattattcctaaccgatttcaagacggttatggactcagcctcaat
atcattaaaaagcttgatgccacggtgattatcaccgtagataatggtatttctgctgtg
gattctgctcaatattgcaaagaacatggtattgatttgattattactgaccatcacagt
atccctagtattgtgccagatgcgtatgcgattgtgaatccaaagcaaacagattgccag
tttccaaattgtgaaatttgtggtgcgcaagtggcctggtatttgacggcttctatcaaa
gggaaactaaaaataaaatacgatttatcatcttttttagatatcttatgtattgccatt
atggccgatatgatggaactcaaagatatgaatcgggtgatggtgaaaaaaggaattctt
gcccttaatcgctccaaaagacccgcttttgaggctgtcaaaaaattcttttctaaaaaa
acattagagagtgatgagatatcttttttgattgcccctctcatcaacagttcgggtaga
atggaagatgcaaaattttcttataacttcttaaaatctcaaaatattgatgatgcaatg
gatcgcttagaatacattgtcagcctcaataacagtagaaaagatgaagaaaaacaactc
tttgaagcctctttatcttatgtgaaagaagatgaaaatatcatcattgcatggggtgaa
gattggcatgaaggtgttttgggtatcgtggcctcacgtctctcaaaacgattcaaaaaa
ccagctattgttttttctattacagatgataaagccaaaggaagtgctcgaggtatcggc
gaacttgatatccttgccttaattacattacaacaagatattttattgggttttggtggg
cataaaggggctgctggcgtctccttgatggcggataagctcgaagagtttcgtgaccga
atgtatgcctctacgcgtgatattgaagcttctacgctcaatgcaaatcatgatgttctt
ggcgagatagaaccctctgagatagattttgagttgcttgaaattttagaagagtttgaa
ccttacggacaaaagaatcccaaaccaaattttattttgaaagatattgcggtgaagatc
aacaagaaaataggcaaagatcaaaaccatctcaaattaatacttcatgatggtgtcaat
acgctagaatctatattttttaattttgacaaagatgcaaaagttggtgaaaagattgat
atacttttcacactctcaagaaatgattaccgaggtttagtgacgccacaactcattata
aaagagattctttaa
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