Sulfurospirillum sp. 1612: SFB89_02730
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Entry
SFB89_02730 CDS
T11274
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sulu Sulfurospirillum sp. 1612
Pathway
sulu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sulu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SFB89_02730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sulu03021
]
SFB89_02730 (rpoC)
03400 DNA repair and recombination proteins [BR:
sulu03400
]
SFB89_02730 (rpoC)
Enzymes [BR:
sulu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SFB89_02730 (rpoC)
Transcription machinery [BR:
sulu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SFB89_02730 (rpoC)
DNA repair and recombination proteins [BR:
sulu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SFB89_02730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WVV36929
LinkDB
All DBs
Position
532504..537021
Genome browser
AA seq
1505 aa
AA seq
DB search
MKNLVPVEILDDNRPRDFQAFQLRLASPEKIRSWSFGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGIKCEKCGVEVTSTKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAFYDAENTKKVEKYDVLNEEQYQSLFQR
FEDSGFVADMGGQVVKDLLADLDLVEILGTLKEEMSLTNSEAKKKTIVKRLKIVEALLHS
QNRPEWMMITVLPILPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNSRLKRLMELDAPQI
IIRNEMRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPTLRMDQCGLPKLMALELFKPHLIARLEEKGYATTIKQAKKMIDNKTNEVWE
CLSEVVEGYPIMLNRAPSLHKLSIQAFHPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHV
PLSQEAIAECKVLMLSSMNILLPASGKAVTVPTQDMVLGLYYMSLEKVNAKGSNKIFSNI
NEVHIALDSGYLVPQAKIKTVVDGKVIFTTAGRLIIKSILPEFVPQEYWNKVMKKKNIAE
LVDYVYKEGGYNVTAEFLDNLKNLGFKYATKAGISVSIDDIKVPETKVAKIGAAKKKVRE
IQKQYSSGLLTEQERYNKIVDIWTDTNNDLAKEMMKLTESDKDGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLIDVSQNVKVTMEDCGTHEGVEITEISESGELIESLTDRAFGRVLAEDVIDTITN
EVLFTEGTLIDEKKAKTLEEAGVKSVVIRTPITCKAKKGICAKCYGINLGVGTLVKPGEA
VGIISAQSIGEPGTQLTLRTFHIGGTASTEAQDRQVIAQKEGFIRYYNVKTYVSKESRNI
IANRRNASILLVEPKIKATHDGILSIDNSHDEAIITIKAADGESSKYVLRKSDLAKSNEL
AGVSGKVEGKFYLPYGNGDTVHENESIVEIIKESWNIPNRIPYASEVRVHDGDPISQKIL
SEALGTVKYYKLAGDYLERYNAVEKDHQVDEKGLFAVIADAENREAIRHYIPRGSIIDLE
DNTVVDTLDTVLAHPSSAEQIVIAEWDPYSVPIISEESGVITFEDIEPGVSATEQFDEMT
GESRLVINEYLPAGLKPTLIIATDSGKIIKYQLEPKTAIFVKDNEHVNIADIIGRTPKAA
ARSKDITGGLPRVSELFEARRPKDATVIAEIDGTIRFGKPLRSKERIIIDAEDGTSVEYL
INKNTQIHVHAGEFVHTGEKLTDGVVSSHDILRIMGEKALHYYLISEIQQVYRRQGVAIS
DKHIEIIVSQMLRQIKIVDSGDTKFIEGDLISRIRFNEENEKIIKMGGEPAIAEPILLGV
TRAAIGSDSIISAASFQETTKVLTEASIAAKMDHLRDLKENVILGRMIPVGTGLYKDKSI
KIKQQ
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatttagtaccggttgaaatattagatgataatagaccaagagactttcaagcg
tttcaattgcgacttgcaagtcctgaaaaaatcagatcatggagttttggcgaagtcaaa
aagccagaaaccatcaattatagaacattaaagcctgagagagacgggcttttttgtgcg
aagattttcggtcctgtaagagattatgaatgtctttgtggtaaatacaaaaaaatgcga
tataagggcattaagtgtgaaaaatgtggggttgaagtcacaagtaccaaagtgagacgc
tctcgcatgggacacattgaattagtaactccggttgctcatatttggtatgtcaattct
cttccaagtagaattggaacgcttcttggcgtgaaaatgaaagatttagagagagtatta
tattatgaagcgtatatcgtcaaagagcctggtgaagctttctatgatgccgaaaataca
aaaaaagtagaaaaatatgatgttctcaatgaagaacaataccaatcactgtttcaacga
tttgaagacagcggatttgtagcggacatgggtggacaagtggtcaaagacttgttggct
gatcttgatcttgttgagattttgggtacattaaaagaagagatgtctttgacaaattct
gaagcaaaaaagaaaacgatagtaaaacgtttgaagattgttgaagcattattgcacagt
caaaatagaccagaatggatgatgattaccgtccttccaatattgccaccagaccttcgt
cctcttgtctcactagatggcggtaaatttgcggtcagtgacgtcaatgacttgtatcgt
agagttattaatagaaactcaagactaaaacgtttgatggagcttgacgcgccacaaatt
attatcagaaatgagatgcgaatgttgcaagagagtgtggatgcactctttgataacgga
cgtcgcgccaatgctgtcaaaggtgccaataaaagacctttgaaatcgctctctgaaatc
attaaagggaaacaaggacgttttcgtcaaaacctactcggtaagagggttgacttctct
ggtcgttctgttattgtcgtaggaccaacactgagaatggaccaatgtggtcttccaaaa
ttaatggcattagaattatttaaaccgcatttgatcgcgcgactggaagaaaaagggtat
gcgacgacgattaaacaagcgaaaaagatgattgataataaaaccaatgaagtgtgggaa
tgtttatctgaagtcgttgagggatatccgattatgctaaaccgtgcaccatcactgcac
aaactctctattcaagcctttcatccggttttgattgaaggaaaagctattcgtttgcat
ccgctcgtgtgttctgcttttaatgcggacttcgatggggatcaaatggccgtacatgtt
cctttatcccaagaagcgattgctgagtgtaaagtcttgatgctaagttctatgaatatc
ctcttgcctgcatcaggtaaagcagtcaccgtaccgacacaagatatggtcttgggtctt
tattatatgtctttggaaaaagtcaatgctaaagggtctaataagattttttcaaatatc
aatgaagtccatattgcattagattcaggttacttagtacctcaagctaaaatcaaaacc
gttgtcgatggcaaagtgatttttacgaccgcaggacgccttattatcaaatcaatttta
ccagagttcgtaccgcaagagtattggaacaaggtaatgaaaaagaaaaatattgctgaa
ttggttgattatgtttataaagaaggcggttataacgtgacggctgaatttttagataat
ctaaaaaatctcggtttcaaatacgcaaccaaagcgggtatttcagtctctattgatgat
atcaaagtccctgaaacaaaggtagctaaaattggtgctgctaagaaaaaagtacgagaa
attcaaaaacaatacagctcaggacttttgacagaacaagagcgatataacaaaattgtc
gatatttggacagacacgaacaacgaccttgccaaagagatgatgaagctcacggagagt
gataaagatggctttaactcaatctacatgatggcagactctggtgctaggggtagtgcg
gcacagattcgtcagctagcaggtatgcggggattgatggcaaaaccagatggtagtatt
attgaaacaccgattatttcaaactttagagaaggtctaaacgtccttgaatactttatc
tcaacgcatggtgctagaaaaggtttggccgataccgcgctaaaaacggcgaatgcgggt
tacttgacaagaaaacttatcgatgtttctcaaaatgtcaaagtaacgatggaagattgt
ggtacgcatgaaggtgttgaaatcacagaaatcagtgaaagcggtgaactcatcgaatca
ttgactgatcgtgcttttggtagagtattagcagaagatgtcatcgatactatcactaat
gaagtgctctttacagaaggtactttgattgatgagaaaaaagccaaaacactcgaagaa
gcaggcgtcaaatcagtagttatccgaacaccaatcacatgtaaagccaaaaaaggtatt
tgtgcaaaatgttatggtattaatctgggtgtcggtactttggtaaaaccaggtgaagct
gtgggtattatctcagcacaatcaatcggtgagccaggaacgcaactaacactaagaaca
ttccacatcgggggaacggcgtctactgaagcacaagacagacaagtcatcgcacaaaaa
gaaggttttatccgatattacaatgttaaaacttatgtctcaaaagagagtagaaatatt
attgcaaaccgtagaaatgcatcgattctccttgttgagccaaaaataaaagccactcat
gatggtattttgagtattgataattctcatgatgaagcgattattaccatcaaagccgca
gatggtgagagcagcaaatatgtgcttagaaaaagtgatcttgcaaaatcaaacgaactc
gcgggtgttagtggtaaagtagaaggtaagttttatctaccatatggcaatggtgatacg
gtccatgaaaatgaaagtattgtcgaaatcattaaagagagttggaatattccaaatcgt
atcccatacgcgagtgaagtacgcgtacacgatggtgatccgatatctcaaaaaatcctc
tcagaagcattaggtacggtgaagtattacaaattagcaggggattacctagaacgctac
aatgcggtagaaaaagatcatcaagttgatgaaaaaggtctatttgctgtgattgcggat
gctgaaaatagagaagcgatccgacattatattccaagaggttcaattattgacctagaa
gataataccgtagtagataccttggacactgttttggcacatccaagcagtgccgaacaa
atcgtgattgcagagtgggatccatattcggttccgattatatcagaagagtccggtgtg
attacgttcgaagatattgaacctggtgtgagtgcgacagaacaatttgatgaaatgacc
ggtgagagccgactcgttatcaatgaatatctcccagcaggattgaagccgacattgatt
atcgcaacagattcaggtaagattattaaatatcaattagaaccaaagactgcgatattt
gtcaaagacaatgagcacgtcaatattgctgatattatcggtagaacaccaaaagctgct
gcaagatcaaaagatattaccgggggtcttcctcgtgttagtgaactctttgaagccaga
cgtccaaaagatgcgacggttattgcagagattgatggaacgattcgatttggtaagcca
cttcgttcaaaagagcgtattatcatcgatgccgaagatggcacgagtgttgagtatttg
attaataaaaatacgcaaatccacgtgcatgcgggcgagtttgttcatacgggtgaaaaa
ttaactgatggtgtggtatcaagtcatgatattctaagaattatgggtgaaaaagcactg
cattattatttaatcagtgaaatccaacaagtctatcgaagacaaggtgttgcgattagc
gataaacacatcgaaattatcgtctctcaaatgttgagacagattaaaatcgtagatagt
ggggacactaaatttatcgaaggtgatttgattagtagaattcgatttaacgaagaaaat
gaaaaaattatcaagatgggtggtgaacctgcaattgctgagccaattttattgggtgtt
acccgtgcggcaatcggaagtgatagtatcatctctgctgcatcattccaagagacaact
aaagtcttgacagaagcgagtattgctgcgaaaatggatcacttgagagatttgaaagaa
aacgttatattgggtcgaatgattccagtaggaaccggtttgtataaagataaatcaatc
aagataaaacaacaataa
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