Sulfurospirillum sp. 1612: SFB89_04160
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Entry
SFB89_04160 CDS
T11274
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sulu Sulfurospirillum sp. 1612
Pathway
sulu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFB89_04160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulu03019
]
SFB89_04160
03016 Transfer RNA biogenesis [BR:
sulu03016
]
SFB89_04160
Enzymes [BR:
sulu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SFB89_04160
Messenger RNA biogenesis [BR:
sulu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SFB89_04160
Transfer RNA biogenesis [BR:
sulu03016
]
Prokaryotic type
tRNA degradation factors
SFB89_04160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
MOR2-PAG1_C
Motif
Other DBs
NCBI-ProteinID:
WVV37204
LinkDB
All DBs
Position
829845..832082
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AA seq
745 aa
AA seq
DB search
MEYKIEVNNQTEIYDIGKVAKQAAGSVMLKIKNTVILAAISRDDKQVDENFVPLTVQYIE
KTYASGKFPGGFMKRETKPSDFETLTSRIIDRSLRPLFPDGYAYPTQLTVFVLSCDPEVD
LQVAALNAASAAIYVSDIPVNKSVSGVRIGRIDGELVVNPTNTELSNSTLDLYVAGTKEE
LLMIEMKANASMDNNTLPMMTIDPMIDPTLSENMLPVQKINEATEEEILEAIDKAQEAIS
AAAHAYEEAFSPIKKEDAVLEYKQDLMDDSIAIYIDEFYKEEVKDAIAKMAKSERASELK
TIIKKIMTDDTAIKEEWSEEVVKNVMNDYKRKIVRKMIIEDGVRADGRTLTEVRPISIET
NILPSVHGSCLFTRGQTQALVSITLGGDKDGQMYELLTKKGNQVDNFMVNYNFPGFSVGE
ATPLRSPGRRELGHGNLARRALEPTLDVDRVQTIRLVSEILESNGSSSQATICGGSLALK
AAGVNVHKLVAGIAMGVVFEDDKHAILTDIMGLEDHDGDMDFKVAGTRDGITALQMDIKL
GGISRDTLKEALYQAKEGRNHILSIMEKADEEIKVNNSILPKLELFSIDPSKIVDVIGQA
GKTIREIIEKFEVSIDLDRDKGEVKIAGDNKEKVEAAKEHIVGIVNQPSRGRDSRGRDNR
RGGSHRDSKPVPKFVQDEVVDGVVKRIVDFGAFVELPGGIDGLLHVSKIADHRVERVSDY
LEIEQAVKVKILKQNGNKIELALVK
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggaatataagatcgaagtcaacaaccaaaccgagatttatgatataggaaaagttgca
aaacaggcagcaggctctgtcatgttaaagattaaaaatacagtcatattagcggctatc
tcaagagatgataaacaagtggatgaaaattttgtcccactaacggtacaatacatagaa
aaaacttatgcatcaggaaaatttcctggtggctttatgaaaagagaaaccaagccaagt
gattttgaaaccctaacttctcgcattattgatcgaagtttaagaccactatttcctgat
ggatatgcttacccaacacaattaaccgtgtttgttttgagttgtgatcctgaagtcgat
cttcaagttgccgctctcaatgccgcaagtgctgcgatatatgtctctgatattcctgtt
aacaagtctgtcagtggcgttagaataggaagaatcgatggtgaattagtcgtcaaccct
accaatacggaactgtcaaactcgacacttgatttatatgtagctggaaccaaggaagag
ctcttaatgatcgagatgaaagccaatgcgagcatggataataataccctgcctatgatg
acaattgatccgatgattgaccccactttgagtgaaaatatgctaccggttcaaaagata
aatgaagcaaccgaagaggagatactcgaagccatagataaagcacaagaggcgattagt
gctgctgctcatgcttatgaagaagccttttccccaattaaaaaagaagatgcggttctt
gaatacaaacaagaccttatggacgattctattgctatttatatcgatgaattttataaa
gaagaggtcaaagatgccattgcaaagatggcaaaaagtgaacgtgcaagtgaactcaaa
acgattatcaaaaaaatcatgacagatgatactgctatcaaagaagagtggagtgaagaa
gtcgtcaaaaatgtgatgaatgactataagagaaaaattgtacgtaagatgattatcgaa
gatggcgtacgagcagatggtagaacactgactgaagtaagaccgatttcaattgaaacc
aatatcttgccaagtgttcatggctcttgcctttttacaaggggccagacacaagctctc
gtctccattaccctaggtggagataaagatggacaaatgtacgaattattgactaaaaag
ggaaatcaagtggataactttatggtcaattacaattttccgggattttcagttggcgaa
gcgacaccacttcgatccccaggcagacgcgaactaggacatggaaatttggccagacgt
gcattggagccgactttagatgttgatcgtgttcaaacgattcgattggtatctgaaatc
ttagaatccaacggctcatcatcgcaagcaacgatttgtggcggttctttggcgcttaaa
gctgcgggagtgaatgttcataaattggtagcaggtattgcgatgggtgtggtatttgaa
gatgacaaacatgctattttgactgatatcatgggacttgaagatcatgatggcgatatg
gactttaaagtagcaggaacccgtgatggtattactgctttgcagatggatataaaacta
ggtggcatctcaagagatacactaaaagaagcgttgtatcaagccaaagagggacgtaat
catatcctctctattatggaaaaagcagatgaagagattaaagtcaataattctatttta
ccaaaattagagctttttagcattgatccttcaaaaattgttgatgtcattgggcaagca
ggtaaaaccatacgagaaattattgaaaaattcgaagtttctatagacttagaccgtgat
aagggtgaggtaaaaattgccggtgataataaagaaaaagtagaagcggcaaaagaacat
attgttggtatcgtcaatcaaccttcacgtggtagagattcacggggacgtgataacaga
agaggtggcagtcacagagacagcaaaccggttccaaaatttgtacaagatgaagtggta
gatggtgtcgtgaaaagaatcgtagattttggtgcttttgtcgaattgcctggtggtatt
gatggattgcttcatgtctctaaaattgcagaccaccgcgtagagcgagtgagtgattat
ttggaaattgagcaggctgttaaagtgaagattctaaaacaaaatggcaataaaatagaa
ttagcattggttaaataa
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