Sulfurospirillum sp. 1612: SFB89_06465
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Entry
SFB89_06465 CDS
T11274
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sulu Sulfurospirillum sp. 1612
Pathway
sulu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFB89_06465 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulu03019
]
SFB89_06465 (rny)
Messenger RNA biogenesis [BR:
sulu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SFB89_06465 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_2
KH_KhpA-B
KH_NusA_C
Motif
Other DBs
NCBI-ProteinID:
WVV37581
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Position
complement(1299385..1300938)
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AA seq
517 aa
AA seq
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MLESTVVGASALIGAGFGFLISKKMEAANHEVRVEQAKAKAKAIEHEAELVLKNSKIKVR
EAELEAREQYEDKLISFKKDLSEKMLELDKKEDHYKEELKKINKDKSELGNLQKEAKELY
AEGASLKEEYASKVKEALLVLEKSSGLTQEEAKEIVLKKVEEQSRDEIAHIVRKYEEEAK
QDGKRKADYILAQATSRFAGEFAAERLINVVNIKNDELKGRIIGKEGRNIKTLEMLLGVD
IIIDDTPNAIILSSFNLYRRAVATKVIELLVEDGRIQPARIEAIYEKVKEDFDQGLIEEG
QNIVMDLGLSRVHPEIIKLIGRLKFRASYGQNALGHSLEVAHLAGIIAAETGGDEILARR
AGILHDIGKALTHDFPGSHVDLGADICKRYKEHPVVINAIYAHHGHEEPLSVESAAVCAA
DTLSAARPGARREVLEAFLKRVQDIEEIATSKDGIKHAYAINAGREIRVIANAKLINDDE
AVLLAKEIAKEIEERVQYPGEIKVNVIREVRSVDFAR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atattagaatcaacagtagttggagccagtgctttaatcggtgcaggctttggattttta
atctccaaaaaaatggaagcggccaatcatgaggtgcgagtagagcaggcaaaagcaaaa
gcaaaagcgattgaacacgaagcagaattggtattgaaaaatagcaaaataaaagttcgc
gaagcggaacttgaagcacgcgagcagtatgaagataaactcatctcgttcaaaaaagat
ctctcagagaaaatgctagaacttgataaaaaagaagatcattataaagaagagttgaag
aagataaataaagataaaagtgaattgggcaatctacaaaaagaggccaaagagctctat
gctgaaggagctagcttaaaagaagagtatgcttcaaaagtcaaagaagccttattggtt
ttggaaaaatcatcgggcttaacacaagaagaggccaaagaaattgtccttaaaaaagtg
gaagaacaatctcgtgatgagattgcacatattgtacgaaaatatgaagaagaagccaaa
caagacggcaaaagaaaagcagactatatcttggcacaagcaacgagtcgttttgctggg
gaatttgcagcagagcgtcttatcaatgtcgtgaatatcaaaaatgatgaactcaaaggg
cgtattattggtaaagaaggacgcaatattaaaacgcttgaaatgctattgggcgtagat
attatcatcgatgatacacctaatgcgattattttaagtagttttaacctctacagacgt
gctgtggctaccaaagtgatagaactgttagtcgaagatggcagaattcagcctgcacgt
attgaagcgatttatgaaaaagtgaaagaagactttgaccaaggcttgatcgaagaggga
caaaacatcgtgatggatttaggtttgagtcgtgttcatcctgaaatcattaaattaatc
ggaagattaaaattccgtgcgagttatggacaaaatgcactcggacactctttggaggtg
gcacatcttgcgggtatcatagccgcagaaaccggtggtgatgaaatcctagcacgtcgt
gcgggaatattacatgatattggaaaagctttgacgcatgattttccaggaagtcatgtc
gatttgggtgcagatatttgtaaaagatataaagagcatcctgttgttatcaatgccatt
tatgctcatcatggacatgaagaaccactctctgtagaatcagcagcggtatgtgctgct
gatacgctttcggctgcaaggccgggtgcgagacgtgaagtccttgaggcatttttgaaa
agagtgcaagatatcgaagagattgccacaagcaaagatggtatcaagcatgcttatgcg
attaatgcagggcgagagatccgcgtgattgctaatgccaaattaatcaatgatgatgaa
gcggtcttgttggctaaagaaattgccaaagagattgaagagcgtgtacaatatcctggc
gaaataaaagtcaatgtcattcgagaggttcgttcggtggattttgctagatag
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