Sulfitobacter sp. TCYB15: ABM428_09415
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Entry
ABM428_09415 CDS
T10553
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
suly Sulfitobacter sp. TCYB15
Pathway
suly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
suly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABM428_09415 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suly03400
]
ABM428_09415 (mfd)
Enzymes [BR:
suly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABM428_09415 (mfd)
DNA repair and recombination proteins [BR:
suly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABM428_09415 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
Cas3-like_C_2
AAA_30
SecA_DEAD
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XCF09320
UniProt:
A0AAU8C0P2
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All DBs
Position
1972322..1975810
Genome browser
AA seq
1162 aa
AA seq
DB search
MSEKSQITLSGVPEGFDAQAVLNELGKNGTPVLHIARDDKRMAAMQAALRFFAPDVPVVV
FPGWDCLPYDRVSPNADISAQRMATLAGLVHGMPDRFILLTTLNAATQRVPARDVLRDAA
FSARVGDRIDEAALRGFLVRMGFVQSPTVTEPGDYAIRGGIIDIFPPGDLGPVRLDLFGD
TLDGARRFDPVTQRTTEKLELVELAPVSEVILDESAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHQGAEHWMSFFHETLETLFDYVPRATITLDDQLTAQRLSRWESIADQYETRRLA
MANRSKMDSVYKPAPPEGLYLTDTAWETALIGKRVISFKPLPQPTGPNVLDAGGRLGRNF
APERQQETISLFGALAAHIKAKLQEGPVVIASYSDGARERLTGLIEDEGMGETIAIKNGT
RIGKRGLHLAVWALEHGFEAPWESGSSASKLTVISEQDILGDRLIRAPKRKRRAENFLTE
TQSLSPGDLVVHVDHGVGRYLGMEVVTAAGAAHECLLLEYAESSKLYLPVENIELLSRYG
HDEGLLDKLGGGAWQSKKAKLKERIREMADKLIRIAAERALRKAPVMDPPPGMWDAFSAR
FPYTETDDQLNAISDVLDDLTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVA
PTTLLARQHYKSFAERFRGFPLEVRQLSRFVTAKEATATRDGINRGTVDVVVGTHALLAK
TVKFKNLGLLIIDEEQHFGVGHKERLKAMRTDIHVLTLTATPIPRTLQLSLTGVRDLSII
GTPPVDRLAIRTYVSEFDAVTLREALLREHYRGGQSFYVVPRITDLPEIEAFLKEQLPEL
TYLVAHGQMAAGELDDRMNAFYDGKYDILLATTIVESGLDIPTANTMIVHRADMFGLAQL
YQIRGRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTLASQDLDIRGAG
NLLGEEQSGQMRDVGFELYQSMLEDAIAKIKSGELEGVIDDDGQWAPQINLGVPVLIPED
YVPDLDVRLGLYRRLSELTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGI
AKLDGGPKGVTIQFHNDKFASPEGLVTFIQDQRGLAKVKENKIVVKRDWKTDADKIKGAF
AIARDLAEHVIAKEKKAKKAKA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaaatcccaaatcacgctgtccggcgttcccgaaggttttgacgcacaggcg
gtgctgaacgaactgggcaaaaacggcacaccggtgttgcatattgcccgcgatgacaaa
cgcatggcggcaatgcaggcggcgctgcgctttttcgcgccggatgtgcctgtggtggtc
ttccccggatgggattgccttccctatgaccgcgtgtcgcccaatgccgatatctcggcg
cagcggatggcgacgctggcgggactggtgcatggaatgccggaccgttttatcctgctg
accacgctgaacgccgcgacccagcgggtgcctgcgcgcgatgtcctgcgcgatgccgcg
ttttcggcccgtgtgggcgaccggatagacgaggcggctttgcgcgggttccttgtccgc
atgggctttgtccagagcccgacggtgaccgaaccgggcgactatgcgatccgcggcggc
atcatcgacattttcccacccggtgatcttggccctgtgcggctggacctctttggcgat
acgctggacggggcgcgccgctttgatccggtgacgcagcgcaccacagaaaagctggag
ctcgtggagcttgcccccgtcagcgaagtcatccttgacgaaagtgctatcacccgtttc
cgccagaactaccggatcgaattcggggccgcgggcaccgatgatccgctatacgaggca
atcagcgcagggcgcaagcatcagggcgcggaacactggatgtcgttctttcacgagacg
ctcgagaccttgttcgactatgtgccgcgggcgacgatcacgctggacgaccaactgacc
gcgcaacgtctgtcgcggtgggagagtatcgcggatcaatacgaaacccgcaggctggcg
atggcgaaccggtcgaagatggacagcgtctacaagcccgcaccgcccgaagggctgtac
ctgaccgacaccgcgtgggaaactgcgctgatcggcaaacgcgtgatcagtttcaagccg
ctcccacagccgacgggtccgaatgtgctggatgcgggcggacgcttggggcgcaatttc
gcgcccgagcggcaacaggaaaccatcagccttttcggtgctttggccgcacatattaaa
gcaaaacttcaagaagggccggtggtcatcgccagctattccgacggtgcgcgcgaacgg
ttgactgggctgatcgaagacgaaggcatgggcgagaccatcgccatcaagaacggcacc
cgcatcggcaaacgcgggctgcatctggcggtttgggcgttggaacacgggttcgaagcc
ccgtgggaaagcggcagcagcgcgtcgaaactgaccgtcatctctgaacaggacatcctt
ggcgaccgcttgatccgcgcgccgaaacgtaaacggcgggccgagaatttcctgaccgag
acacaatcgctgagccccggcgatctggtcgtgcatgtggatcacggtgtcggccgctat
ctggggatggaggtggtgaccgccgccggtgccgcccatgaatgtctgctcctggaatac
gccgaaagctcgaagctctatctgccggtcgagaatatcgaactgctgtcgcgctatggc
catgacgaggggctgcttgacaaactgggcggtggcgcgtggcagtccaagaaagccaag
ctcaaggaacgcatccgcgagatggcggacaagctgatccgcatcgccgccgaacgtgcg
ctgcgcaaagcgcctgtcatggatccgccccccggcatgtgggacgcgttttccgcgcgc
ttcccctataccgagaccgacgaccagttgaatgccatctcggatgtgctggacgatctg
accagcggcaacccgatggaccggctgatctgcggcgacgtaggctttggcaagacagag
gtcgccatgcgcgccgcctttgtcgcggccatgtcagggctacaggtggcgattgttgcg
ccgacgaccctgctggcacgtcagcactataagtctttcgccgaacgcttccgaggcttc
ccgcttgaggtgcgacaactgtcgcgttttgtcaccgcgaaagaggccacagccacgcgc
gacggcatcaatcgcggcaccgtcgatgttgtggtcggcacccacgcgctgctggcaaag
acggtcaagttcaagaacctcggcctgctgattattgatgaagaacaacactttggcgtg
ggtcacaaagaacgtctgaaggcgatgcgcacggatattcacgtgctgaccctgaccgcc
acgccgatcccgcgcaccctgcagcttagcctgaccggcgtgcgcgacctgtcgatcatc
ggcacaccaccagtcgaccgtctggccatccgcacctatgtcagcgaatttgatgccgtc
accctgcgcgaggcgctgttgcgtgaacattatcgcggcgggcagtccttctatgtggtg
ccccgcatcaccgatctgcccgaaatcgaagcgttcctgaaagagcaactgcccgagctg
acctatcttgttgcccatgggcagatggccgccggagagctcgacgaccggatgaacgcc
ttttacgacgggaaatatgacatcttgctggccacgacgattgtggaatccggtctggat
atcccgacggccaacacgatgatcgtgcaccgtgccgatatgttcggtctggcacagctc
taccagatcaggggcagggtgggccgatcaaaaacccgcgcctatgcctatctgacaacc
aaaccccgtgccaagctgactgccacggcagagaagcgtttgcgggtgttgggcagcctc
gacacgcttggggcaggctttacgctggcgtcgcaggatcttgatattcgcggtgcgggc
aacctgctgggcgaggaacaatccggccagatgcgtgacgtggggttcgagctttatcaa
tccatgctggaagacgcgattgccaagatcaagtcgggcgagttggaaggcgtgatcgac
gacgatgggcagtgggcaccgcagatcaatctgggcgtgccggtgctgatccccgaggat
tacgtccctgatctggatgtgcggcttgggctctaccgtcgcctgtccgaactgaccacc
aaggtcgagctggaaggctttgccgccgagctgatcgaccgtttcggcaagctgccgaaa
gaggtgaacacactgatgctggtcgtgcggatcaaggcgatgtgcaaacgcgccggtatt
gccaagctggatggcggacccaagggggtcacgatccagttccacaacgacaaattcgcc
tcgcccgaggggttggtcaccttcattcaggaccaacgcgggctggcaaaggtcaaagag
aacaagatcgtcgtcaagcgcgactggaaaaccgatgccgacaagatcaaaggggccttt
gccatcgctcgtgatctggcagagcatgtgatcgccaaggaaaagaaggccaagaaagca
aaagcctga
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