Sulfitobacter sp. TCYB15: ABM428_10240
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Entry
ABM428_10240 CDS
T10553
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
suly Sulfitobacter sp. TCYB15
Pathway
suly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABM428_10240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suly03019
]
ABM428_10240
Enzymes [BR:
suly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABM428_10240
Messenger RNA biogenesis [BR:
suly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABM428_10240
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XCF09473
UniProt:
A0AAU8C0L9
LinkDB
All DBs
Position
complement(2133864..2135165)
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AA seq
433 aa
AA seq
DB search
MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPL
VAQMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIK
RMERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKE
RQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELL
GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVLV
ATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKDI
QKTMKISIPVASGRPWEAIDEPAKPKGRGGRGRGRGGRPGGGGGNGGGGNGGGAGKPAGA
ARRRRKPAGQRAA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattttgaaatgatgggcctgccgcgccgtctggtcaaagccttgaccaacatg
ggcatgaccgatccgaccccgatccagaaacaggcgatcccccacgggatgaatggccgc
gacgtgatggggctggcacagaccggcaccggcaagaccgccgccttcggtatcccgctg
gtggcccagatgctggaacgcgaagcccgccccgagccgcgcaccgtgcgcgggctggtg
ctggccccgacccgcgagctggccaaccagatcatggagaacctcaaagggttctgcgaa
gggacccagttgaaaaccatgatgattgtcggcggccagtcgatcaacccgcagatcaaa
cggatggagcgtggcgtcgacctgctggtggccacacccgggcgcttgctggacctgatg
gaccgccgcgcggtgcttttgcacaagaccactttccttgtgctggatgaagcggaccag
atgctcgacatgggctttatccacgatctgcgcaagattgcggcggtgctgccgaaagag
cgtcagaccatgctcttctcggcaaccatgccgaaactgatgaacgagattgccaacagc
tacctcaacagcccgatccgcatcgaagtctcgcctccgggcaaggcggcggataagatc
acccaagaggtgcatttcatcgccaaggcggaaaagaaatccctgctgatcgaactgctt
ggcaaacacaccgaggaacgcgccctggtgttcgggcggaccaaacacggctgtgaaaag
ctgatgaaagatctggtcaaagccggtttcaaagccgcatcgatccatggcaacaaaagc
cagggtcagcgggaccgcgccatcgaatccttcaagaaaggcgaggtcactgtgctggtg
gcaacggatgtcgccgcccgcggtttggatattcccgacgtgaagcacgtctacaactac
gagctgcccaatgtgcccgacaactatgtccaccgtatcggccggaccgcgcgcgcgggc
aaagacggggcggcgatcgctttctgcgcgccggatgaaatgggcgagctgaaagatatc
cagaagacgatgaaaatctcgatccccgtggcctccggccgtccgtgggaagcgattgac
gaacccgccaagccaaagggtcgcggcggacgcggtcgtggtcgcggtggtcgccccggt
ggcggtggcggtaacggtggcggtggcaatggcggcggtgcgggcaaacccgccggtgcc
gcgcggcgtcgtcgcaaaccagccgggcagcgcgccgcatag
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