Sulfitobacter sp. TCYB15: ABM428_11965
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Entry
ABM428_11965 CDS
T10553
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
suly Sulfitobacter sp. TCYB15
Pathway
suly02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
suly00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABM428_11965 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suly03021
]
ABM428_11965 (rpoD)
Transcription machinery [BR:
suly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABM428_11965 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
XCF09795
UniProt:
A0AAU8C166
LinkDB
All DBs
Position
complement(2501372..2503354)
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AA seq
660 aa
AA seq
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MAAKDTNEDAKSDDQDAGHSLDMSQAAVKKMIGEAREKGYITYDQLNTVLPPDQVSSEQI
EDVMSMLSEMGINVIEDEEAEEEDAKGGTEIATTESNRDVALSSGTSEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDV
IDLEATFGTQMGDEEETTPVVPTAGTETKPAESTSEVDADGNPISNDDDDEDDDEQANMS
LAAMEAALKPQVLEALDIIADDYVKLSQIQDSRISATLNEDGTFSKTDEEEYQRVRSEIV
ALVNDLHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRKEFVDAYRGYELDPN
WMERMAEKSGRGWQMFIERSSDKVDELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacacgaacgaagacgcgaagtctgacgaccaggatgccggccattcg
cttgatatgagccaagccgccgtcaaaaagatgatcggcgaagcccgtgaaaagggctat
atcacctacgatcagctgaacaccgttctgccccctgaccaagtcagctcggagcagatc
gaggatgtgatgtcgatgctgtccgaaatgggcatcaacgtgatcgaagacgaagaagcc
gaagaagaagacgccaagggcgggaccgaaattgcgaccacggaaagcaaccgtgatgtg
gcgctgtcctctggcacgtccgaaaagctggaccgcacggatgaccccgttcgcatgtat
ctgcgcgagatgggatcggttgaactgctgagccgcgagggcgagattgccatcgccaag
cggatcgaggcagggcgcaacacgatgatcgcggggctgtgtgaaagcccgctgaccttc
caggcgatcacgatctggcgcgacgaacttttgtccgaagacattttgctgcgcgatgtc
atcgacctcgaggcgacattcggcacccagatgggcgacgaagaggaaacgactccggtc
gtgccaaccgcgggcaccgagacaaagcccgccgaaagcacaagcgaagttgacgccgac
ggcaacccgatctcgaacgatgacgacgacgaggatgacgacgaacaggccaacatgtcg
ctggccgcgatggaagccgcgctgaagccgcaagtgctggaagcgctcgacatcattgcc
gatgactacgtcaagctgagccaaattcaggacagccggatttcggccaccctgaacgag
gacggcaccttttcgaagaccgatgaggaagagtaccagcgcgtccgctccgagatcgtg
gctttggtcaacgacctgcacctgcacaacaaccgtatcgaagcgctgatcgaccagctt
tacggcatcaaccgccgcatcatgcagatcgactctgcgatggtgaagcttgccgaccaa
gcgcgcatcaaccgcaaggaattcgtcgacgcctatcgcggctatgagctggaccccaac
tggatggagcggatggccgagaagtccggtcgcggctggcagatgttcatcgaacggtcc
tctgacaaggtggacgagctgcgggccgatatggcgcaggtggggcaatacgtcggtctt
gatatctctgaattccgccgcatcgtgcagcaggttcagaagggcgagaaagaggcccgt
caggccaagaaagaaatggtcgaggcgaacctgcgtctcgtgatctcgatcgccaagaaa
tacaccaaccgtggcctgcaattccttgatcttattcaggaagggaacatcggtctgatg
aaggccgtcgacaagttcgaataccgtcgcggctataaattctcgacctatgcgacatgg
tggatccgtcaggcaatcacccgttccatcgcggatcaggcgcgcaccatccgtattccg
gtccacatgatcgagacgatcaacaagctggttcggaccggccgtcagatgctgcacgag
attggccgcgagccgacgccggaagagctggccgagaagctgcagatgccgcttgagaaa
gtgcgcaaggtgatgaagatcgccaaggagccgatctccctcgaaacgcctattggcgac
gaggaagacagccagcttggtgatttcatcgaggataagaatgctgtgctgccgctcgac
agcgccattcaggaaaacctcaaggagaccacgacacgggttctggccagcctcaccccg
cgcgaggaacgtgtgctgcggatgcgcttcggcatcggcatgaacaccgaccacacgctg
gaagaagtcggccagcagttcagcgtgacccgcgaacgtatccgtcagatcgaggcgaag
gcactgcgcaagctcaagcacccaagccggtcgcgcaagctgcggtcgttcctcgatcag
taa
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