Sulfitobacter sp. SK012: C1J03_03185
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Entry
C1J03_03185 CDS
T05563
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sulz
Sulfitobacter sp. SK012
Pathway
sulz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sulz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1J03_03185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sulz03021
]
C1J03_03185 (rpoC)
03400 DNA repair and recombination proteins [BR:
sulz03400
]
C1J03_03185 (rpoC)
Enzymes [BR:
sulz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1J03_03185 (rpoC)
Transcription machinery [BR:
sulz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1J03_03185 (rpoC)
DNA repair and recombination proteins [BR:
sulz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1J03_03185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AXI45127
LinkDB
All DBs
Position
642697..646941
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTNNPFNPVAPTKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTELTYGQMLTEEEYMEAQDIYGMDAFT
ANIGAEAIREMLAAIDLEAEADQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLDREGVKGQGKVFGNVEEVQHAL
DAGEVHMHAKVKARIKQIDAEGNEVMIRFDTTPGRMLLGALLPLNAKAPFDLVNRLLRKK
EVQQVIDTVYRYCGQKESVVFCDQIMTMGFREAFRAGISFGKDDMLIPETKWPLVDETRG
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGAISAHTYAEDGSENEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMHDCGTETAITAVAAVNDGEVVSSLADRLLGRV
VADDILRPGTEEVLVTAQSIIDERLADIIDEAGVASARIRSPLTCEAEEGVCAQCYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEAAQSGKVRFESVQ
TIENAAGETMVVGRNMKLLLIDENGEERASHKVGYGTKLFVKEAQNVIRGDKLFEWDPYT
LPIIAESAGMTKFVDLVSGIAVKDETDDATGMTQKIVIDWRAAPKGNELKPEVILIDKDG
EPIRNDAGNPVTYPMSVDAVLSVEDQTEIKAGDIIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESSEDPEYKVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQESGDTTLLKGEHVDKQEFDQANEKALSKKGRPAKGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQQMRKVATDRDNVVIEARRE
EAEAAAALAAPEPAEDIIGGDVFSTPVDNSESRE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgtttaacccagtcgcgccaaccaagacgttcgac
gagatcaaggtctctttggcatcgccagagcggatcttgtcgtggtctttcggtgagatc
aagaagccagaaaccatcaactatcggacgtttaagcccgagcgtgatggcctgttctgt
gcccgtatctttggcccgatcaaagattatgaatgcctgtgcggtaaatataagcgcatg
aaatatcgcggcgttgtctgcgaaaaatgcggcgttgaagttacgctgcaaaaagtgcgc
cgcgagcggatgggccacattgagttggcctcaccggttgcgcacatctggttcctgaaa
tcgctgccttcgcgcatcggtttgatgctggacatgacactgcgtgatctggaacgggtt
ctgtactttgagaactacgttgtgatcgagccgggcctcaccgaactcacctacggtcag
atgttgaccgaagaagagtatatggaagcccaagacatctacggcatggatgcattcacc
gccaatattggtgctgaagcgatccgcgaaatgctggctgcgattgatctggaagcagaa
gcagaccaactgcgtgcggacctcaaagaggccacaggcgagctgaagcccaagaagatc
atcaagcgtctgaaggtcgtcgagagcttccttgaatctggcaaccgccctgagtggatg
gttctgaccgtgatccctgtgatcccgccagaactgcgtccgctggtgccgctggatggt
ggccgtttcgcgacgtctgaccttaatgatctgtaccgccgggttatcaaccgtaacaac
cgtcttaagcgtctgatcgaactgcgcgcgcctgacatcatcgtgcgtaacgaaaagcgg
atgctgcaggaatctgttgatgctctgtttgacaatggccgtcgtggccgcgtcattacg
ggtgctaacaaacgtccgctgaagtcgctgtctgacatgctgaaaggcaagcaaggccgc
ttccgtcagaaccttttgggcaagcgcgtcgacttctctggtcgttccgtgattgtgact
ggtcctgagctgaagctgcaccagtgtggtttgccgaaaaagatggcgctcgaactgttc
aagccgttcatctattcgcgccttgaagccaagggtctgtcttcgacggttaaacaagcc
aagaagctggttgagaaagagcgtcccgaagtttgggatatcttggatgaagtcatccgt
gaacaccctgtcatgctgaaccgtgcgccgacgttgcaccgtttgggcatccaggcgttt
gaacccgtattgatcgaaggtaaggctatccagctgcacccgctcgtttgttcggccttt
aacgctgactttgacggcgaccaaatggccgtgcacgtaccgctgagccttgaagcccag
cttgaagcacgcgtcttgatgatgtccacgaacaacgttctgtcgcctgcaaacggtgca
ccgatcatcgtgccatcacaggatatgatcttgggcctttactacgtcacgctagaccgt
gaaggcgtaaaaggtcagggcaaagtctttggtaacgtcgaagaagttcagcacgcgctg
gacgctggcgaagtgcatatgcacgccaaggtcaaagcacggatcaagcagatcgacgcc
gaaggcaatgaggtcatgatccgttttgacaccacgccaggccgtatgcttttgggggct
ttgttgccgctgaacgcaaaggcaccgtttgatctggtcaaccgtctgttgcgcaagaaa
gaagtgcagcaagtcatcgacaccgtttaccggtattgtgggcaaaaagaatccgtcgtc
ttctgtgatcagatcatgacaatgggtttccgcgaagcattccgggccggtatttcgttc
ggcaaagacgacatgctgatccccgaaaccaagtggccactggttgatgaaacccgcggt
caggttaaggactttgaacagcagtacatggacggcctgattactcagggcgaaaagtac
aacaaagttgttgatgcttggtcgaagtgtaacgacaaggtcaccgatgcgatgatgggg
gcgatttcggctcacacatatgctgaggacggttccgagaatgagccaaactctgtctac
atgatggcccactctggtgcgcgtggctcggtcactcagatgaaacagctcggcgggatg
cggggcctgatggccaagccgaacggcgacatcatcgagacaccgatcatctcgaacttt
aaagaaggcctgaccgttcttgagtacttcaactcaacgcacggtgctcgcaaaggtttg
tcggacaccgccctgaaaacggcgaactccggttacctcacgcgtcgtttggtggacgtg
gctcaggactgtatcgtgcgcatgcatgattgtgggactgaaaccgcgatcaccgctgtt
gcggctgtgaacgacggcgaagtcgtgtcttcgctggcggatcgcttgctgggccgtgtg
gttgcggatgatatcttgcgccctggtacagaagaagtgttggtgacggcacagtccatc
atcgacgaacgtctggcggacatcattgacgaagctggcgttgcttcggcacggatccgt
agcccattgacctgtgaggccgaagaaggcgtttgtgcgcaatgttatggtcgtgacctt
gcacgtggtacgcttgtgaaccaaggcgaagcggtgggtatcatcgcggcgcaatcaatt
ggtgaacctggtacacagctgacgatgcggacgttccacatcggtggcgttgcacaaggt
ggacagcagtccttccttgaggccgcacagtcaggcaaagtacgcttcgagagtgtccag
accattgaaaacgccgctggcgagaccatggttgtgggccgcaacatgaagctgctgttg
atcgatgaaaacggcgaagaacgtgccagccacaaggtcggttacggtaccaaactgttt
gtcaaagaagcgcagaacgtgatccgtggcgacaaattgttcgaatgggatccctacacc
ctgccgatcatcgctgagagcgctggtatgaccaagttcgtcgatctggtttctggtatc
gcagtcaaggacgagacggatgatgccacaggcatgactcagaagatcgtcattgactgg
cgcgcggcccccaaaggcaacgagctgaagccagaggttatcctgatcgacaaagatggc
gagccgatccgcaatgatgcgggcaatccggtgacctatccgatgtctgttgatgcggtt
ctgtccgtcgaagaccagaccgaaatcaaagctggtgacatcattgcgcgtatccctcgt
gaaggtgccaagaccaaggacatcaccggtggtctgccacgtgtggccgaactctttgag
gcacgtcgccccaaggatcacgctatcatcgcggaaatcgacggctatgtgcggttcggc
aaagactacaagaacaagcgtcgcatcgcgatcgagtcttcggaagatcccgagtacaag
gtcgagtacatggtgcctaagggcaagcacatcccggttgcggaaggtgactttgtccaa
aagggcgactacatcatggacggcaatccagcgccgcatgatatccttgcgattatgggt
gtcgaagcgctagcggattacatgatcgacgaagtgcaggacgtctaccgcctgcaaggt
gtgaagattaacgacaaacacatcgaagtcatcgtgcgtcagatgctgcaaaagtgggaa
atccaggaatctggcgataccacgctgctgaaaggcgaacacgtcgacaaacaagagttc
gaccaagccaacgaaaaggcgctgtccaagaaaggccgtcctgccaagggcgaaccgatt
ctgctgggcatcacaaaggcgtcgctacaaacccgtagcttcatctctgcggcgtccttc
caggaaaccacgcgcgtgctgacggaagcttccgttcagggcaagcgggacaaactggtt
ggcctcaaagagaacgtcatcgtgggtcgtctgatcccagcaggcacaggtggggcaacc
cagcagatgcgcaaagttgccactgaccgcgacaatgtcgtgatcgaggcgcgccgcgaa
gaagccgaagccgcagctgcacttgcagcgcctgagccggccgaggacatcatcggtggt
gacgttttcagcacgccggtcgacaactcggaaagccgcgaataa
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